Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02396 ATGATGGCAATGCTAGCACTGCTAACAATGCTGCTTATGAATCTTGAAAATATTCATAAAGGCCTGTCAGATCCATGTCCCTTTCGTGTAACTTGTACACAGAATAAGAAGATGCTTGAGCTGCAAGGAGTTTCAGGCCCAGTGAAACTCCTCATCAGTCAAATTGATTACAGATTGCAATCACTAGAAGCATATGACCCTGAAAACTGTCTACCTTCAGTATTTCTTAGACTCAACTATTCATCAAACATTCCATTCCAATCTGAATTTCGAGAACAACCGAACAAACTTAGTTTCTTCGATTGTTCTTCAGTAGGGCAACGACATCTGAGAAGCTGGGACCAAATACAAGATGATGCACAAGATATGATATCTTGCCCTATTTATGCCGCTTTCTCTGATGCAAGTATCGTTAATTTGGACTTATTATCCTGCACCAAATTGTTTGACCGTGTTTTACCAGTACTCTTATATCAGATACGGAGAAACTCATTCTCATTGAAGTGGTCGAATACAAGTTTTGACAGAGGATGCATAGAATGTGCAATAGTAGGTTCAATTGTGTTAGGGCTTTTGCTCGGTGCAATCTTTCAAATATATAGCTATTTTAGGATGAAAGGGGAAGATGATGCAAGAGTGGAAAACTTCTTGAAGGATTACAGGGCTTTAAAGCCAACAAGATTCTCTTATGCTGATATAAAGAGAATCACACATCAATTTAAGGAAAAGTTAGGTGAAGGAGCTCATGGAGCTGTGTACAAAGGTGAATTATCCAGTGAAATTGTGGTTGCTGTGAAGATCCTCAATAACACAGAGGGAGATGGAACAGAGTTCATAAATGAAGTTGGAACCATGGGCAAAATCCACCATGTCAATGTGGTTCGTTTGCTTGGCTTTTGTGCTGATGGATTTCAAAGAGCTTTAGTTTATGACTTTTTCCCAAATGGCTCACTGCAGAAATTCATCTCTCAACCAAACAACAAGGATGCATTCCTTGGATGGGAAAAGTTGCAACAAATTGCTCTAGGCATAGCCAGAGGAATTGAGTATCTTCACCAAGGTTGTGATCATAGGATCCTTCACTTTGACATCAATCCTCATAACGTCTTGCTAGATGACAGTTTCATTCCTAAGATTTCAGACTTTGGTTTAGCTAAGCTGTGCTCAAAAAATCAAAGCACTGTATCCATGACTGCAGCCAGGGGAACACTAGGCTACATGGCACCTGAAGTTTTCTCTAGAAACTTTGGCAATGTGTCTTATAAGTCTGATATCTACAGCTATGGGATGTTGTTGCTAGAGATGGTTGGGGGAAGAAAGAATATAAACACAGGTGAAGAAAATTTCCAAGTTCTGTATCCTGATTGGATACACAGTTTGCTTGAAGGGAGGGACATACATATCCCTATTGATGAAGAGGGGGATTTTAGAATTGCAAAGAAACTGGCCATTGTGGGACTTTGGTGCATCCAGTGGCACCCTGTGCATAGACCATCTATGAAAACTGTTGTGCAGATGCTTCAAGGAGAGGAAGACAAGTTAAAAGTTCCTCGCAACCCCTTTGGGCCTACAGATTCTTTAACTAATACAAGTGCTAATAGTGTTGCAGGACGTTTGAATTTGGAGCTTGAAGTGATTGAAGAGTTAGATTAG 1653 0.3999 MMAMLALLTMLLMNLENIHKGLSDPCPFRVTCTQNKKMLELQGVSGPVKLLISQIDYRLQSLEAYDPENCLPSVFLRLNYSSNIPFQSEFREQPNKLSFFDCSSVGQRHLRSWDQIQDDAQDMISCPIYAAFSDASIVNLDLLSCTKLFDRVLPVLLYQIRRNSFSLKWSNTSFDRGCIECAIVGSIVLGLLLGAIFQIYSYFRMKGEDDARVENFLKDYRALKPTRFSYADIKRITHQFKEKLGEGAHGAVYKGELSSEIVVAVKILNNTEGDGTEFINEVGTMGKIHHVNVVRLLGFCADGFQRALVYDFFPNGSLQKFISQPNNKDAFLGWEKLQQIALGIARGIEYLHQGCDHRILHFDINPHNVLLDDSFIPKISDFGLAKLCSKNQSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNINTGEENFQVLYPDWIHSLLEGRDIHIPIDEEGDFRIAKKLAIVGLWCIQWHPVHRPSMKTVVQMLQGEEDKLKVPRNPFGPTDSLTNTSANSVAGRLNLELEVIEELD. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02396 550 Pfam Protein tyrosine and serine/threonine kinase 239 507 IPR001245 GO:0004672|GO:0006468
Seca8g02396 550 ProSitePatterns Protein kinases ATP-binding region signature. 244 266 IPR017441 GO:0005524
Seca8g02396 550 FunFam PR5-like receptor kinase 313 519 - -
Seca8g02396 550 Gene3D Phosphorylase Kinase; domain 1 212 312 - -
Seca8g02396 550 FunFam serine/threonine-protein kinase PBS1-like 206 312 - -
Seca8g02396 550 PANTHER RUST RESISTANCE KINASE LR10-RELATED 210 526 IPR045874 GO:0004672
Seca8g02396 550 Gene3D Transferase(Phosphotransferase) domain 1 313 519 - -
Seca8g02396 550 SUPERFAMILY Protein kinase-like (PK-like) 221 507 IPR011009 -
Seca8g02396 550 ProSiteProfiles Protein kinase domain profile. 238 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02396 Seca-Chr8 50800544 50802850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02396 204 534 Receptor kinase-like Gene Family AT1G66910 48.830 8.44e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g02396 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02396 - - tpra:123893308 748.814