Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02395 ATGTACAGAGGGAAATCTTTCTCTTGCGCTAGAGGATTACTGTTATGCTTCCTCCAAATTATAGTTCTGCAACAAACTTGTGCTGCAAATAACCATGAAACTTGTTCCCCTTCTTCCTGTGGCAAAATCACCAATATAAGTCATCCATTTCGACTGAAGGATGACCCAGCAAACTGTGGGGATCCGAGGTATGAGTTAACTTGTGAAAACAACAACACTGTTTTATCTCTGTATTCTGGTAAATACTATGTGAAGGCAATCAACTACAGAAACTTCACAATCCGGCTAGTTGATCCAGGCATTGAAGAGGCTAATTGCTCCTCCATTCCTCGCTATTTCTTATCAGCATCCAATTTCACTGATTCTTACAATTACCCCTCTCTCTATCATATTAACATCACGGATCCATATCAAGCCACTCAATTAAGAGATGGATTGGTAACAGCCTCTGAATTCCAACACGTAATTTACTTGAATTGTAGCAACCCAGTGAGGGACAATCCAAGGTACGTGGATACAGCTCCTTGCATAAACTGGCACTCAAAAGGGCATGTTTATGCTGTTGCTGGGGACATGTTGGCTGAGGACTTAAAAGTTGATTGCAAAGTGAAGCTAGCTTCTGTGACATCCTATTTTGGTTTGAAATATAGTTATGATCTTAGAGATGTGTATAGCATCGGAACCTTTTCCTATGGTCAGATTCATGGGATGCTAGCTTATGGATTTGATGTTTCGTGGATGAGTTTTCCTTGTGAAGATCGTTGTGGAACGCGACCTTGTTACCTTAATGAAACCAGCGAGGGACTTGAATGCGAATACTGGTCTTATTACTGTGCTTCTCCATTGGGATTTCATGTTAGATGTGACGCCTCTTGCAAGCCAATGGAACCATTTCATATCAATCTCAATTTACTCAATGGTCTTAAAAGGCAAGGTATTATATATGGCATCGCTAAAGGACTACTACAAACAATAGGTTTGGAAACGAGGATTGCATCCAAAGGCATTTCTGATTCTAAACTTGGTATTGAGATAGGGAGAATTGTGGGAAGATTTTCTACAAGGGAATATTCATTCAAAGAGATAAAGAAGATGACTACAAATTTCAAGTACAAGTTGGGTGAAGGAGGCTATGGCACTGTTTATAAAGGAAAGCTACGAAGTGGGCCTTTTGTAGCCATAAAAATGTTAGGTAAACCTAAGGCTAAAGGGCAAGAATTTATTAGTGAAGTTGCAACCATAGGTAGAATACACCATGCCAATGTGGTGAGACTTATTGGATATTGTGTTGAGGCATCAAAACGTGCTCTTGTTTATGAATTCATGCCCAATGGCTCACTTGATAAATATATTTCCTCCAAAGAGGATGCTCTGTCTCTAACTTATAAACAAATGTATGAGATATCTCTTGGAGTTGCTCGTGGTATTGCTTATTTGCATCAAGGGTGTGATATGCAAATTTTGCATTTTGATATCAAGCCCCATAACATCCTTCTTGATGAGAATTTTATCCCTAAGGTTTCAGACTTTGGTCTTGCAAAGCTTTATCCTATTGATAATAGCATTGTAACTTTGACTGCTGCAAGAGGAACAATTGGTTACATGGCTCCTGAATTGTTCTACAAGAATATTGGAGGAGTATCCTATAAGGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAATAAGAGAAGAAATGTAAACCCACATGCAGATCATTCGAGCCAGATTTTCTTTCCCATTTGGATTTACAACCATTTTATTGAAGAAAGGGAGATTGAAATAAGGGAAGAAGTTTCCAATGAGGAAAAGAATAATGTGAAGAAGATGTTCATAGTTGCATTGTGGTGTATACAGTTAAAACCTAGTGATCGTCCTTCAATGAACAGAGTAATAGAGATGCTTGAAGGAGATATTGAGAGCATTGAAATGCCTCCAAAGCCCTCTTTGTATCCAAATGAAATGATTGAAGGAGATCTCGAAATCATCAGCTCTAATGAAATCACATCAGATGATGCTACTGACTCACTTAGCTTCCTTGAGGAAACTCAAACAGATCCTTTATTAAAGTATTCTGCTTGA 2091 0.3859 MYRGKSFSCARGLLLCFLQIIVLQQTCAANNHETCSPSSCGKITNISHPFRLKDDPANCGDPRYELTCENNNTVLSLYSGKYYVKAINYRNFTIRLVDPGIEEANCSSIPRYFLSASNFTDSYNYPSLYHINITDPYQATQLRDGLVTASEFQHVIYLNCSNPVRDNPRYVDTAPCINWHSKGHVYAVAGDMLAEDLKVDCKVKLASVTSYFGLKYSYDLRDVYSIGTFSYGQIHGMLAYGFDVSWMSFPCEDRCGTRPCYLNETSEGLECEYWSYYCASPLGFHVRCDASCKPMEPFHINLNLLNGLKRQGIIYGIAKGLLQTIGLETRIASKGISDSKLGIEIGRIVGRFSTREYSFKEIKKMTTNFKYKLGEGGYGTVYKGKLRSGPFVAIKMLGKPKAKGQEFISEVATIGRIHHANVVRLIGYCVEASKRALVYEFMPNGSLDKYISSKEDALSLTYKQMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMANKRRNVNPHADHSSQIFFPIWIYNHFIEEREIEIREEVSNEEKNNVKKMFIVALWCIQLKPSDRPSMNRVIEMLEGDIESIEMPPKPSLYPNEMIEGDLEIISSNEITSDDATDSLSFLEETQTDPLLKYSA. 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02395 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Seca8g02395 696 Gene3D Phosphorylase Kinase; domain 1 347 441 - -
Seca8g02395 696 FunFam serine/threonine-protein kinase PBS1-like 346 441 - -
Seca8g02395 696 Gene3D Transferase(Phosphotransferase) domain 1 442 647 - -
Seca8g02395 696 Pfam Wall-associated receptor kinase galacturonan-binding 35 98 IPR025287 GO:0030247
Seca8g02395 696 FunFam PR5-like receptor kinase 442 650 - -
Seca8g02395 696 Pfam Protein kinase domain 370 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02395 696 ProSiteProfiles Protein kinase domain profile. 367 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02395 696 PANTHER RUST RESISTANCE KINASE LR10-RELATED 353 658 IPR045874 GO:0004672
Seca8g02395 696 SUPERFAMILY Protein kinase-like (PK-like) 352 639 IPR011009 -
Seca8g02395 696 SMART serkin_6 367 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02395 696 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02395 Seca-Chr8 50794731 50800567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02395 35 654 Receptor kinase-like Gene Family AT5G38260 35.322 2.67e-106 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g02395 Pkinase 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02395 - - mtr:25482268 808.905