Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02394 ATGCTGACACAGGTTGTCCCTTCACTTATATGGGCTTGTAATGCTGCAGTTCATGAAAGGGTACTTAGGACATGTGATGACTTTGTCTGGCCTGTGGATACTTCATTCCTTGGTCGCTTCGTTGTAGATGTTGAATTTCTTGACCTGAAGATCTGCCCTCTGAGTGGTGGAGAAGCCGGTTCTGTATGGCCATCTGATGGAAAACTGCAATCTATTGCAACTCAAAGCACTCTCGGATGCCTCTCTCGCATGCTTGATGAAGCTATACATGCTGACCTCACCATTATCACTACAGATGGTACACTGAGAGCTCATAAGGCAATTTTGTCTGCAAGTTCTCCTGTGTTCCAGGGCTTGTGTCATCACGATGGAGAGGAAAAGGAGTCATTTACAATCCAGATAGAAGACATGTCACAAGAATCCTGCATGGCCCTTTTGAGTTACTTGTATGGCACAATAAAACACGAAGATTTCTGGAAGCACAGGCTTGCATTGCTTGCAGCAGCCAATAAATATGACATTGGTGATCTCAAAGATGCTTGTGAGGAAAGCCTACTGGAAGATCTTAACTCAGGAAATGTTCTGGAGAGGCTAAATGAGGCTTGGTTGTACCAATTGCACAAGTTAAAGAAAGGATGTTTCACGTTCTTATTTGACTTTGGTAAGATATATGATGTTAGAGATGAAATAAATACCTTTTTTCGTCATGCAGCAGAAAGGGAGCTAATGCTGGAGATGTTTCAGGAAGTGCTTACAATTTGGAAATAG 768 0.4258 MLTQVVPSLIWACNAAVHERVLRTCDDFVWPVDTSFLGRFVVDVEFLDLKICPLSGGEAGSVWPSDGKLQSIATQSTLGCLSRMLDEAIHADLTIITTDGTLRAHKAILSASSPVFQGLCHHDGEEKESFTIQIEDMSQESCMALLSYLYGTIKHEDFWKHRLALLAAANKYDIGDLKDACEESLLEDLNSGNVLERLNEAWLYQLHKLKKGCFTFLFDFGKIYDVRDEINTFFRHAAERELMLEMFQEVLTIWK. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02394 255 Pfam BTB/POZ domain 84 187 IPR000210 GO:0005515
Seca8g02394 255 ProSiteProfiles BTB domain profile. 91 150 IPR000210 GO:0005515
Seca8g02394 255 Gene3D Potassium Channel Kv1.1; Chain A 67 218 IPR011333 -
Seca8g02394 255 SMART BTB_4 91 189 IPR000210 GO:0005515
Seca8g02394 255 PANTHER OS08G0495500 PROTEIN-RELATED 14 255 IPR044714 -
Seca8g02394 255 SUPERFAMILY POZ domain 75 187 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02394 Seca-Chr8 50773995 50778159 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca8g02394 BTB 1.3e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02394 K10523 - gmx:100775687 399.823