Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02392 ATGGACTGCAATAAAGAAGAGGCCTTAAGGGCCAAGGATATTGCTGAAAAGAAGATGGAAAGCAGGGATTTCATGGGGGCTCGTAAATTTGCTCTTAAAGCTCAGCAGCTGTATCCTGATCTGGAAAATACAGCTCAAATGCTTGTTGTTTGTGATGTGCATTGCTCTGCTGAGATGAAATTGTTCGGCAATGAGATAGACTGGTATGAAATTCTTCAACTGGAACAGACGGCTAGTGATGCAATGATTAAAAAGCAATACAGGAAGTTCGCACTCCAACTTCATCCCGACAAAAACAAGTTTGCTGGTGCAGAAGCCGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTGCTTTTAGACAGAGAAAAACGATCTCAGTTTGACATGAAGCGCAGGGTTCCAATGAACAAAACTGCTATGTCACGTCGTAATCAGCAGAAGGCTCCTATGAATTCCAGTTCTGCAATGAAAACCAATGTCAGGCCCAATTTTGCAAACTCGAATACTCAGCAGCAGCAGCAATATAAGCAGCCAGTGCAGCAGCAGCAAAATGGTGGCCGCCCTACTTTTTGGACTGTCTGCCCATTTTGTTCTGTTAAGTATCAGTATTACAGAGAAGTTTTAAATAAACCTCTTCGCTGTCAACATTGCAATAGGCCCTTCATTGCATATAATGTGGATAGGAAAAGTACATCATCAGCAACTAATTCAAGTCAGCAAGCTTTTGGCCAGCAAAAAGATGGTCTGAATCATGGTCCTTCCAAGATGGGTGGATCTCAAGGCAACTTGCATGCTGAGAAGTCCAATACTGGGCTTCACAAGAAGAAAGGCCCTGTTGATGTCTCTGGAAAGCCACATGGAAAGAGGAAGAGGAATAAGGTGGCAGAATCTAGTCAAAGTTCTGATTTTACGAGCAGCACTGATTCTGAAGGTGGTAGGGTTGTTGGTGAGGATGGTGTTCCTGGTGTAGAAAATCATTCAACTTACAGAGAAGAGCAACCACGCAGATCTGCACGACAAAAGCATAAGGTTTCCTACAAGGATAATGTGAGTGACAATGATGATGACCTCTTAAGACCTTCAAAAAGGGGTAAGGAGTGTGGATCGCCATGTGGTGATGGTGAAAGTCATGGTGAGAGAATTAGAAAGAATGATCAGAATGGTTTAGCTGCTGAAAAGAGCTTACAAGATAGAAATGAGGAAACTAAAGTGGCGAGGGGAAAAGCAGTGGGAGGGTCAAAGCAGATGGATGAAACATCAGAGCATTCTTTTTCGGATTTAGCCTCCAAAGCAACAAATCATCCAAATGCTTATGTCTATTTCGAAGCAGAGTTCAGTGACTTTGACAAGGACAAGAAAAAAGAATGTTTTGTGGCAGGGCAGATTTGGGCTGTTTATGATACAACACATGGCATGCCTAGATTTTATGCTTTAATCAGGAAAGTTCTATCTCCTAGATTCAAGCTGCAGATAACATGGTTGGAATCACATCCAGGTAACAATGATGAAATGAAGTGGGTAAATGAGGATATGCCTGTTGCATGTGGGAAATATAAACTTGGTGACACTAACATCATGGAAGATCATCTGATATTCTCTCATGTGGTTACATGTGAAAAGATTGGCCGCAATACTTTCAAAGTGTATCCTAGAAAGGGACAAACTTGGGCTCTTTATAAAAATTGGGATATCAAATGGTACATGGATGTAGAATCTCATAAGCAGTATGAATATGAGTTTGTTGAAATCTTGTCAGATTATGTTGAAGGTGAGGGTGTATATGTTGCACACTTAGCTAAGTTGAAAGGTTTTGTAGGCCTCTTTTTTCGAATTAGGAAAGAAGATAACCAGTCATTTCAAATTCCACCCCAGGAATTATTCAGATTCTCTCACAGGGTTCCCTCTTTCAAAATGACTGGTCAGGAAGGAGTAGATGTTCCTGTAGGATCTTATGAACTTGATCCTGCAGCTTTGCCGATGAATCTTGAAGAGACTGTTGTTCCTGAAAATTTGGATGTGAAGTTTGGTCACAGTTCTGGCACTGAGAATACAAGATCTTCAGAAAGATCAAAACCCCCAATGACATCTGACAGAGAGGTATCTACTCCCAAGGTTAATTTGCAAAGAAGCAATTTGACTGAGAATGAGGATTCTGTTGATGATATTGATGATTGTCATGCTCCTCCAGCTTCGACCCTAGAAGCTATTGTAGTTCCAGATACCCAATTCTTCAATTTTGATGCTGAGAGGTCCCTTGAAAAGTTTCAAATTGGTCAGATTTGGGCATTTTACAGTGATGAGGATGGGTTGCCAAAATACTATGGTCAGATTGATGGGATTGAGACTAGCCCACATCTTGAATTGCATGTTTTTTGGCTTGCTTGCTGCTGGCTACCAGAGAATACCACTAGATGGGAAGACAAAGATATGGTTATTTCCTGTGGCAGATTTAAAGTTAATAAAAGAATTGACTTTCTCAGTGTTTATAGTGGCACCGATTCTGTTTCACACCAAGTGCATGCTGATGCTGTTGGCAACAAAAAGAATTACGCCATCTTTCCAAGGAAAGGTGAAGTTTGGGCATTATATAGAAAGTGGTCAAATAAAATCAAATGTTCTGACTTGAAAAATTGGGAGTATGACATAGTTGAAGTTCTTGAAGAAACTGATTTATTTACAAATGTTCTTGTATTGGAGTTTGTTAGTGGTTTTAGTTCCATTTTCAGGGGCAAGTCAAATGAAGGATCATCTGTCAACCTGAGAATACCCAGAAAAGAGTTGCTTAGGTTCTCCCACAGAATTCCAGCTTTCAAACTGACAGAAGAGCATGGCAATCTGAGTGGCTTCTGGGAACTTGATCCAGGTGCGCTACCAATTCATTATTATGGCTTGGGATGA 2898 0.4086 MDCNKEEALRAKDIAEKKMESRDFMGARKFALKAQQLYPDLENTAQMLVVCDVHCSAEMKLFGNEIDWYEILQLEQTASDAMIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRSQFDMKRRVPMNKTAMSRRNQQKAPMNSSSAMKTNVRPNFANSNTQQQQQYKQPVQQQQNGGRPTFWTVCPFCSVKYQYYREVLNKPLRCQHCNRPFIAYNVDRKSTSSATNSSQQAFGQQKDGLNHGPSKMGGSQGNLHAEKSNTGLHKKKGPVDVSGKPHGKRKRNKVAESSQSSDFTSSTDSEGGRVVGEDGVPGVENHSTYREEQPRRSARQKHKVSYKDNVSDNDDDLLRPSKRGKECGSPCGDGESHGERIRKNDQNGLAAEKSLQDRNEETKVARGKAVGGSKQMDETSEHSFSDLASKATNHPNAYVYFEAEFSDFDKDKKKECFVAGQIWAVYDTTHGMPRFYALIRKVLSPRFKLQITWLESHPGNNDEMKWVNEDMPVACGKYKLGDTNIMEDHLIFSHVVTCEKIGRNTFKVYPRKGQTWALYKNWDIKWYMDVESHKQYEYEFVEILSDYVEGEGVYVAHLAKLKGFVGLFFRIRKEDNQSFQIPPQELFRFSHRVPSFKMTGQEGVDVPVGSYELDPAALPMNLEETVVPENLDVKFGHSSGTENTRSSERSKPPMTSDREVSTPKVNLQRSNLTENEDSVDDIDDCHAPPASTLEAIVVPDTQFFNFDAERSLEKFQIGQIWAFYSDEDGLPKYYGQIDGIETSPHLELHVFWLACCWLPENTTRWEDKDMVISCGRFKVNKRIDFLSVYSGTDSVSHQVHADAVGNKKNYAIFPRKGEVWALYRKWSNKIKCSDLKNWEYDIVEVLEETDLFTNVLVLEFVSGFSSIFRGKSNEGSSVNLRIPRKELLRFSHRIPAFKLTEEHGNLSGFWELDPGALPIHYYGLG. 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02392 965 MobiDBLite consensus disorder prediction 232 247 - -
Seca8g02392 965 SMART dnaj_3 66 123 IPR001623 -
Seca8g02392 965 Pfam Domain of unknown function (DUF3444) 438 642 IPR024593 -
Seca8g02392 965 Pfam Domain of unknown function (DUF3444) 736 942 IPR024593 -
Seca8g02392 965 PRINTS DnaJ domain signature 103 123 IPR001623 -
Seca8g02392 965 PRINTS DnaJ domain signature 87 102 IPR001623 -
Seca8g02392 965 PRINTS DnaJ domain signature 69 87 IPR001623 -
Seca8g02392 965 MobiDBLite consensus disorder prediction 672 722 - -
Seca8g02392 965 MobiDBLite consensus disorder prediction 324 387 - -
Seca8g02392 965 SUPERFAMILY Chaperone J-domain 62 133 IPR036869 -
Seca8g02392 965 MobiDBLite consensus disorder prediction 676 713 - -
Seca8g02392 965 MobiDBLite consensus disorder prediction 138 162 - -
Seca8g02392 965 MobiDBLite consensus disorder prediction 232 425 - -
Seca8g02392 965 MobiDBLite consensus disorder prediction 297 311 - -
Seca8g02392 965 CDD DnaJ 67 120 IPR001623 -
Seca8g02392 965 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Seca8g02392 965 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 958 - -
Seca8g02392 965 MobiDBLite consensus disorder prediction 134 162 - -
Seca8g02392 965 MobiDBLite consensus disorder prediction 268 285 - -
Seca8g02392 965 Pfam DnaJ domain 67 128 IPR001623 -
Seca8g02392 965 Gene3D DnaJ domain 64 187 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02392 Seca-Chr8 50735642 50738539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02392 4 226 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.088 6.51e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02392 - - gmx:100795200 1438.32