Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02387 ATGTGTGACTGCTTCTATATTGATTTTCAATGTCACACACACACAAATCATTCCCCACGCGAGACTCATTCAACCCACAATGAAATAGCAGCCACAATAACTACATTTTCTGAGTCCTACTTGATTCCTTGTGACATCATATGTGATTTTGACACATTCGGAATCATAGATCCTGAATGTTTGCCTATTACCTTTTTGCGTGAAACCTTCTCATCTGTCCCTGTTTCTTCAGAGTCTATGGACTCAATTCTACTCAGTCTTGTTGAACGTACTAGGGGAATGTTTGAAACCAACAATGAAGGAAGTCACATATTGGAGATGTCTGTGATTGTTTGCATTAACACATGGCCGAGGAATAGTGCAGATGAAGAAGGTATTGATCACTCTATAGATGACCTCATCAAGTCGCTTGAAATTTTTAAATTTGACGATAATGATGATTCTTGTCCAAAATTATGCCCAATTTGTTTGGAGGGGTTGGACACTACCCGTGGATCCCAATCAAAAATTGTTCGCACTAAGTGCTTTCATGTTTTTCATGAAAAGTGCATTTCTCAATGGTTTCTGCGCTGTAACAACCAGGATCAATATTGTTCATGTCCATTGTGTCGTTGTCAAATTACTTCTTGA 630 0.3857 MCDCFYIDFQCHTHTNHSPRETHSTHNEIAATITTFSESYLIPCDIICDFDTFGIIDPECLPITFLRETFSSVPVSSESMDSILLSLVERTRGMFETNNEGSHILEMSVIVCINTWPRNSADEEGIDHSIDDLIKSLEIFKFDDNDDSCPKLCPICLEGLDTTRGSQSKIVRTKCFHVFHEKCISQWFLRCNNQDQYCSCPLCRCQITS. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02387 209 PANTHER SI:CH211-59O9.10 122 208 - -
Seca8g02387 209 SUPERFAMILY RING/U-box 133 208 - -
Seca8g02387 209 ProSiteProfiles Zinc finger RING-type profile. 153 204 IPR001841 -
Seca8g02387 209 Pfam Ring finger domain 153 204 IPR001841 -
Seca8g02387 209 CDD RING-H2 153 204 - -
Seca8g02387 209 SMART ring_2 153 203 IPR001841 -
Seca8g02387 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 208 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02387 Seca-Chr8 50637600 50638229 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02387 132 209 Rapid Response to Elicitors AT3G16720 34.615 3.89e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02387 - K22378 mtr:112418131 115.931