Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02384 ATGTGTGACTGCTTCTATATTGATTTTCAATGTCACACACACACAAATCATTCCCCACGCGAGACTCATTCAACCCACAATGAAATAGCAGCCACAATAACTACATTTTCTGAGTCCTACTTGATTCCTTGTGACATCATATGTGATTTTGACACATTCGGAATCATAGATCCTGAATGTTTGCCTATTACCTTTTTGCGTGAAACCTTCTCATCTGTCCCTGTTTCTTCAGAGTCTATGGACTCAATTCTACTCAGTCTGGTTGAACGTGCTAGGGGAATGTTTGAAACCAACAATGAAGGACGTCACATATTGGAGATGTCTGTGATTGTTTGCATTAACACATGGCCGAGGAATACTGCAGATGAAGAAGGTATTGATCACTCTATAGATGACCTTATCAAGTCGCTTGAAATTTTTAAATTTGACGATGATGATGATTCTTGTTCAAAACTATGCCCAATTTGTTTGGAGGGGTTGGACACTACCAATGGATCCCAATCAAAAGTTGTTCGCACTAAGTGTTTTCATGTTTTTCATGAAAAGTGCATTTCTCAATGGCTTCTGCGCTGTGACAACCAGGATCAATCATGTTCATGCCCATTGTGTCGTTGTCAAATTGCTTCTTGA 630 0.3952 MCDCFYIDFQCHTHTNHSPRETHSTHNEIAATITTFSESYLIPCDIICDFDTFGIIDPECLPITFLRETFSSVPVSSESMDSILLSLVERARGMFETNNEGRHILEMSVIVCINTWPRNTADEEGIDHSIDDLIKSLEIFKFDDDDDSCSKLCPICLEGLDTTNGSQSKVVRTKCFHVFHEKCISQWLLRCDNQDQSCSCPLCRCQIAS. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02384 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 209 IPR013083 -
Seca8g02384 209 SMART ring_2 153 203 IPR001841 -
Seca8g02384 209 Pfam Ring finger domain 153 204 IPR001841 -
Seca8g02384 209 CDD RING-H2 153 204 - -
Seca8g02384 209 SUPERFAMILY RING/U-box 133 207 - -
Seca8g02384 209 ProSiteProfiles Zinc finger RING-type profile. 153 204 IPR001841 -
Seca8g02384 209 PANTHER SI:CH211-59O9.10 103 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02384 Seca-Chr8 50591958 50592587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02384 118 208 C3H Transcription Factor Family AT4G28890 31.915 3.17e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02384 - K22378 mtr:112418131 120.938