Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02383 ATGTGTGACTGCTTCTATATTGATTTTCAATGTCACACACACACAAATCATTCCCCACGCGAGACTCATGCAACCCACGGTGAAATAGCAGCCACAATAACTACATTTTCTGAGTCCTACTTGATTCCTTGTGACATCATATGTGATTTTGACACATTCGGAATCATAGATCCTGAATGTTTGGCTATTACCTTTTTGCGTGAAACCTTCTCATCTGTCCCTGTTTCTTCAGAGTCTATGGACTCAATTCTACTCAGTCTTATTGAACGTGCTAGGGGAATGTTTGAAACCAACAATGAAGGACGTCACATATTGGAGATGTCTGTGATTGTTTGCATTAACACATGGCCGAGGAATACTGCAGATGAAGAAGGTATTGATCACTCTATAGATGACCTCATCAAGTCGCTTGAAATTTTTAAATTTGACGATGATGATGTTTCTTGTTCAAAATTATGTCCAATTTATTTGGAGGGGTTGCATACTATCGGTGGATCCCAATCAAAAGTTGTTCGCACTAAATGCTTTCATGTTTTTCATGAAAAGTGCATTTTTCAATGGCTTCTACGCTGTAACAATCAGGATCAATATTGTTCATGTCCATTGTGCCGTTGTCAAATTGCTTCTTGA 630 0.3857 MCDCFYIDFQCHTHTNHSPRETHATHGEIAATITTFSESYLIPCDIICDFDTFGIIDPECLAITFLRETFSSVPVSSESMDSILLSLIERARGMFETNNEGRHILEMSVIVCINTWPRNTADEEGIDHSIDDLIKSLEIFKFDDDDVSCSKLCPIYLEGLHTIGGSQSKVVRTKCFHVFHEKCIFQWLLRCNNQDQYCSCPLCRCQIAS. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02383 209 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 162 206 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Seca8g02383 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 208 IPR013083 -
Seca8g02383 209 SUPERFAMILY RING/U-box 133 207 - -
Seca8g02383 209 ProSiteProfiles Zinc finger RING-type profile. 153 204 IPR001841 -
Seca8g02383 209 PANTHER SI:CH211-59O9.10 113 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02383 Seca-Chr8 50573861 50574490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02383 153 207 C3H Transcription Factor Family AT4G12190 40.000 9.14e-06 40.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02383 - K22378 mtr:112418131 117.087