Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02365 ATGGATGATCCCAGAGACCAGTTTCCTAAAGGAATGCGTGTTCTTGTTGTTGATGATGACCCAACATATCTCATGGTTTTGAAGACTCTGCTCCGAAGATGTCAACACAATGTAACTGCAACTAAAAATGCAATATCGGCACTGAAATTTTTGAGAGAAAACAAAAGCAGGTTTGACTTGGTAATCAGTGATGTTCACATGCCAGACATGGATGGCTTTAAACTGTTTGAGCTTGTGGGTCTTGAGATGGACCTACCTGTCATAAAATTGATTGATAAATATGAAACTCTAGTATATAAGAGCAAAGTAAACTTAAGAAGATTTTCTTGGGCAAGGACCCTGCAGAAGTCTCAAAATAGTCGCATCATCTCTAATAATCTTGGCTCACTGGAAGACTTGGTCAGTACAATGATGAAATAG 420 0.3857 MDDPRDQFPKGMRVLVVDDDPTYLMVLKTLLRRCQHNVTATKNAISALKFLRENKSRFDLVISDVHMPDMDGFKLFELVGLEMDLPVIKLIDKYETLVYKSKVNLRRFSWARTLQKSQNSRIISNNLGSLEDLVSTMMK. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02365 139 SMART REC_2 12 117 IPR001789 GO:0000160
Seca8g02365 139 Gene3D - 1 96 - -
Seca8g02365 139 ProSiteProfiles Response regulatory domain profile. 13 139 IPR001789 GO:0000160
Seca8g02365 139 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 89 IPR045279 GO:0009736
Seca8g02365 139 Pfam Response regulator receiver domain 14 88 IPR001789 GO:0000160
Seca8g02365 139 SUPERFAMILY CheY-like 10 90 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02365 Seca-Chr8 50332512 50333714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02365 6 90 Response Regulator Gene Family AT4G31920 74.118 5.20e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g02365 Response_reg 1.2e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02365 K14491 - gmx:100803879 149.058