Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02353 ATGGAATCTGAAGATCTTTATGCATTTTGTTTTGCGCCCAATTCAAATGGGTTTGTTCAAGAGACAATCACAGAATGGAGTAGAGAAATGGTAGAAGATGTGAGTAAGATAGAAGCTGCGGGAGGGGTTCCAGTTCCTGCATATCCTTTCTCCATGGAGATGGTTGACAACCTGCAGGGTCATGATGGATGCAAAAAGAGGCCTGCAACTGCCAAAGAGAGGAAGAAAGGGGTTCGTTGGACAAAAGAGGAGCACACACGTTTTCTGATGGGAATTTCTAAGTATGGCAAAGGGCACTGGAGAGATATCGCTCACAATTATGTAATCACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGCACTACATAAGGCAAAACCTTTCTGGAGGGAAAAGGAAGAGATCTAGTATCCATGATATCACCATTGATAACCTTAAAACTTCAGGTTCATCATATGTCCTTGATTTGGTTTCAATGAGGTCTCTTCAGTTAATTCAATGA 507 0.4221 MESEDLYAFCFAPNSNGFVQETITEWSREMVEDVSKIEAAGGVPVPAYPFSMEMVDNLQGHDGCKKRPATAKERKKGVRWTKEEHTRFLMGISKYGKGHWRDIAHNYVITKTPTQVASHAQKHYIRQNLSGGKRKRSSIHDITIDNLKTSGSSYVLDLVSMRSLQLIQ. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02353 168 FunFam transcription factor MYB1R1 78 129 - -
Seca8g02353 168 Pfam Myb-like DNA-binding domain 79 123 IPR001005 -
Seca8g02353 168 NCBIfam myb-like DNA-binding domain, SHAQKYF class 75 127 IPR006447 GO:0003677
Seca8g02353 168 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 128 IPR017930 -
Seca8g02353 168 Gene3D - 78 129 - -
Seca8g02353 168 SUPERFAMILY Homeodomain-like 74 128 IPR009057 -
Seca8g02353 168 ProSiteProfiles Myb-like domain profile. 72 124 IPR001005 -
Seca8g02353 168 ProSiteProfiles SANT domain profile. 79 128 IPR017884 -
Seca8g02353 168 PANTHER TRANSCRIPTION FACTOR KUA1 23 149 - -
Seca8g02353 168 CDD SANT 79 123 IPR001005 -
Seca8g02353 168 SMART sant 76 126 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02353 Seca-Chr8 50178757 50180566 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02353 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02353 - - ccaj:109813886 166.007