Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02352 ATGGATGATCCCAGAGACCAGTTTCCTAAAGGAATGCGTGTTCTTGCTGTTGATGATGACCCAACATATCTCATGGTTTTGGAGACTCTGCTCCGAAGATGTCAATACAATGTAACTGCAACTAAAAATGCAATATCGGCACTGAAATTGTTGAGAGAAAACAAAAACAGGTTTGACTTGGTAATCAGTGATGTTCACATGCCAGACATGGATGGCTTTAAACTGTTTGAGCTTGTGGGTCTTGAGATGGACCTACCTGTCATAAGTAAGTGA 273 0.4103 MDDPRDQFPKGMRVLAVDDDPTYLMVLETLLRRCQYNVTATKNAISALKLLRENKNRFDLVISDVHMPDMDGFKLFELVGLEMDLPVISK. 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02352 90 SUPERFAMILY CheY-like 10 88 IPR011006 -
Seca8g02352 90 ProSiteProfiles Response regulatory domain profile. 13 90 IPR001789 GO:0000160
Seca8g02352 90 Pfam Response regulator receiver domain 14 88 IPR001789 GO:0000160
Seca8g02352 90 Gene3D - 1 89 - -
Seca8g02352 90 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 88 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02352 Seca-Chr8 50177282 50178078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02352 6 88 Response Regulator Gene Family AT2G25180 79.518 5.81e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g02352 Response_reg 4.9e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02352 - K14491 nnu:104610687 154.451