Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02350 ATGGTAGAAGATGTGAGTAAGATAGAAGCTGCAGGAGGGGTTCTAGTTCCTGCATATCCTTTCTCCATGAAGATGGTTGACAACCTGCAGGGTCATGATGGATGCAAAAAGAGGCCTGCAACTGCCAAAGAGAGGAAGAAAGGGGTTCGTTGGACAAAAGAGGAGCACACACGTTTTCTGATGGGAGTTTCGAAGTATGGCAAAAGGCACTGGAGAAACATTGCTCACCATTATGTAATCACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTACCTAAGGCAAAACCTTTCGGGAGGGAAGAGGAAGAGGTCTAGTATCCATGATATCACCACTGATAACCTTAAAACTTCAGGTCAAGACAAGCCAGCTATTTTGTTCAATGAGTCTCACATGCCAAATGTGCAGCCACAAGAAGGGATTAATCACCACAATGAATTAGAGCCACTCATGCAGGTTTTCAACCCAAATTACGATGATACGTTCTTGTCTACCTCATCTGACATCTGTTCTCACTTTCAAGTTCAGGGAGATCTATACAACTGTGCTTTTCATCAGCCTTATGCCCAACAAGGTTTCACAATGGCTTCCAATGATAACTTCGATTGTGCTTTTGGCTTCCAATGA 636 0.4371 MVEDVSKIEAAGGVLVPAYPFSMKMVDNLQGHDGCKKRPATAKERKKGVRWTKEEHTRFLMGVSKYGKRHWRNIAHHYVITKTPTQVASHAQKYYLRQNLSGGKRKRSSIHDITTDNLKTSGQDKPAILFNESHMPNVQPQEGINHHNELEPLMQVFNPNYDDTFLSTSSDICSHFQVQGDLYNCAFHQPYAQQGFTMASNDNFDCAFGFQ. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02350 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 99 IPR017930 -
Seca8g02350 211 CDD SANT 50 94 IPR001005 -
Seca8g02350 211 SMART sant 47 97 IPR001005 -
Seca8g02350 211 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 98 IPR006447 GO:0003677
Seca8g02350 211 ProSiteProfiles SANT domain profile. 50 99 IPR017884 -
Seca8g02350 211 Gene3D - 49 100 - -
Seca8g02350 211 PANTHER TRANSCRIPTION FACTOR KUA1 2 145 - -
Seca8g02350 211 ProSiteProfiles Myb-like domain profile. 43 95 IPR001005 -
Seca8g02350 211 SUPERFAMILY Homeodomain-like 45 99 IPR009057 -
Seca8g02350 211 Pfam Myb-like DNA-binding domain 50 94 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02350 Seca-Chr8 50145356 50149042 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02350 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02350 - - gmx:100783469 199.519