Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02330 ATGGATGATCCCAGAGACCAGTTTCCTAAAGGAATGCGTGTTCTTGCTGTTGATGATGACCCAACATATCTCATAGTTTTGGAGACTCTGCTCCGAAGATGTCAATACAATGTAACTGCAACTAAAAATGCAATATCGGCACTGAAATTGTTGAGAGAAAACAAAAACAGGTTTGACTTGGTAATCAGTGATGTTCACATGCCAGACATGGATGGCTTTAAGCTGCTTGAGCTTGTGGGTCTTGAGATGGACCTACCTGTCATAATAACTGCAACTAAAAATGCAATATCGGCACTGAAATTGTTGAGAGAAAACAAAAACAGGTTTGACTTGGTAATCAGTGATGTTCACATGCCAGACATGGATGGCTTTAAACTGCTTGAGCTTGTGGGTCTTGAGATGGACCTACCTGTCATAAGTAAGTGA 426 0.4085 MDDPRDQFPKGMRVLAVDDDPTYLIVLETLLRRCQYNVTATKNAISALKLLRENKNRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIITATKNAISALKLLRENKNRFDLVISDVHMPDMDGFKLLELVGLEMDLPVISK. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02330 141 ProSiteProfiles Response regulatory domain profile. 13 129 IPR001789 GO:0000160
Seca8g02330 141 SUPERFAMILY CheY-like 10 90 IPR011006 -
Seca8g02330 141 SUPERFAMILY CheY-like 91 139 IPR011006 -
Seca8g02330 141 PANTHER TWO-COMPONENT RESPONSE REGULATOR 90 139 IPR045279 GO:0009736
Seca8g02330 141 Pfam Response regulator receiver domain 14 94 IPR001789 GO:0000160
Seca8g02330 141 Gene3D - 1 92 - -
Seca8g02330 141 SMART REC_2 12 130 IPR001789 GO:0000160
Seca8g02330 141 Gene3D - 93 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02330 Seca-Chr8 50014804 50016640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02330 6 89 Response Regulator Gene Family AT2G25180 79.762 7.86e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g02330 Response_reg 2.3e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02330 - K14491 nnu:104610687 156.377