Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02317 ATGGTAGAAGATGTGAGTAAGATAGAAGCTGCAGGAGGGGTTCCAGTTCCTGCATATCCTTTCTCCATGGAGATGGTTGACAACCTGCAGGGTCATGATGGATGCAAAAAGAGGCCTGCAACTGCCAAAGAGAGGAAGAAAGGGGTTCGTTGGACAAAAGAGGAGCACACACGTTTTCTGATGGGAGTTTCGAAGTATGGCAAAGGGCACTGGAAAAACATTGCTCACCATTATGTAATCACAAAGACCCCCACCCAAGTGGCAAGCCATGCTCAAAAGTACTACCTAAGGCAAAACCTTTCGGGAGGGAAAAGGAAGAGATCCAGTATCCATGATATCACCATTGATAACCTTAAAACTTCAAGTCAAGACAAGCCAGCTATTTTGTTCAATGAGTCTCACATGCCAAATGTGCAACCACAAGAAGGGATTAATCACCACAATGTGTTAGAGCCACTCGTGCAGAATGAAGAGCCACTCATGCAGGTTTTCAACCCAAATTATGATGATATGTTCTTGTCTTCCTCATATGACATCCATTCCGAGTTTCAAGTTCTGGAAGATCTATACAACTCTGCTTTTCATCAGCCTTATGCCCAACAAGGTTTCACAATGGCTTCTAATGACTTCAACATGGACCCTATTTTTGGTATTCATGCACCGTGA 666 0.4369 MVEDVSKIEAAGGVPVPAYPFSMEMVDNLQGHDGCKKRPATAKERKKGVRWTKEEHTRFLMGVSKYGKGHWKNIAHHYVITKTPTQVASHAQKYYLRQNLSGGKRKRSSIHDITIDNLKTSSQDKPAILFNESHMPNVQPQEGINHHNVLEPLVQNEEPLMQVFNPNYDDMFLSSSYDIHSEFQVLEDLYNSAFHQPYAQQGFTMASNDFNMDPIFGIHAP. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02317 221 SMART sant 47 97 IPR001005 -
Seca8g02317 221 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 98 IPR006447 GO:0003677
Seca8g02317 221 Gene3D - 49 100 - -
Seca8g02317 221 CDD SANT 50 94 IPR001005 -
Seca8g02317 221 ProSiteProfiles Myb-like domain profile. 43 95 IPR001005 -
Seca8g02317 221 ProSiteProfiles SANT domain profile. 50 99 IPR017884 -
Seca8g02317 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 99 IPR017930 -
Seca8g02317 221 Pfam Myb-like DNA-binding domain 50 94 IPR001005 -
Seca8g02317 221 FunFam transcription factor MYB1R1 49 100 - -
Seca8g02317 221 SUPERFAMILY Homeodomain-like 45 99 IPR009057 -
Seca8g02317 221 PANTHER TRANSCRIPTION FACTOR KUA1 2 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02317 Seca-Chr8 49901117 49902155 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02317 Myb_DNA-binding 4.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02317 - - gmx:100783469 207.608