Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02310 ATGATGAAGATGGAGTTGCACTGCAAGTTTGTTTCTGCTGTTAATCAATTAGGCATTGACATGTCATTTTGGTTGCAGAGGTTGTACCTAAAAAAATTCTTAGATTTAATGAATGTTGAAAAGCTCACAAGGAAAAATGTGGTCAGTCATCTCCAGGCATTTTTCTTATCTATAAAATATAGACTTTATCTGAAAAGAATCAGCTGTCAAGCAAACCAACAAGCTAATATGGTGGCAGCCTTAGGTGGTGTAGATACATCCTATTTGGGAATGGGTTCTCTAAGTAGGGTTAGACATTTGCAGTCATTGAGTGGTTCTAGACAGTATCATAACAACCCTTTCAGACCCTTTGCACCTGGTGGGATGATGAGTAGATTGAACACTCCTGCTAGTCTAAATTTTCATGGGTTGTCTTCTTGTGGATCTCTTTAG 432 0.3819 MMKMELHCKFVSAVNQLGIDMSFWLQRLYLKKFLDLMNVEKLTRKNVVSHLQAFFLSIKYRLYLKRISCQANQQANMVAALGGVDTSYLGMGSLSRVRHLQSLSGSRQYHNNPFRPFAPGGMMSRLNTPASLNFHGLSSCGSL. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02310 143 Gene3D - 3 68 - -
Seca8g02310 143 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 101 IPR044841 GO:0003700|GO:0006355
Seca8g02310 143 SUPERFAMILY Homeodomain-like 5 59 IPR009057 -
Seca8g02310 143 NCBIfam myb-like DNA-binding domain, SHAQKYF class 5 56 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02310 Seca-Chr8 49858594 49859342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02310 4 139 Response Regulator Gene Family AT2G25180 47.826 2.87e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca8g02310 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02310 - K14491 gmx:100803879 170.629