Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02304 ATGGATTTCAGACGTTTTCTGATGGGAGTTTCGAAGTATGGCAAAAGGCACTGGAGAAACATTGCTCACCATTATGTAATCACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTACCTAAGGCAAAACCTTTCGGGAGGGAAGAGGAAGAGGTCTAGTATCCATGATATCACCACTGATAACCTTAAAACTTCAGGTCAAGACAAGCCAGCTATTTTGTTCAATGAGTCTCACATGCCAAATGTGCAACCACAAGAAGGGATTAATCACCACAATGAATTAGAGCCACTCATGCAGGTTTTCAACCCAAATTACGATGATACGTTCTTGTCTACCTCATCTGACATCTGTTCTCACTTTCAAGTTCAGGGAGATCTATACAACTGTGCTTTTCATCAGCCTTATGCCCAACAAGGTTTCACAATGGCTTCCAATGATAACTTCGATTGTGCTTTTGGCTTCCAATGA 477 0.4193 MDFRRFLMGVSKYGKRHWRNIAHHYVITKTPTQVASHAQKYYLRQNLSGGKRKRSSIHDITTDNLKTSGQDKPAILFNESHMPNVQPQEGINHHNELEPLMQVFNPNYDDTFLSTSSDICSHFQVQGDLYNCAFHQPYAQQGFTMASNDNFDCAFGFQ. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02304 158 ProSiteProfiles SANT domain profile. 1 46 IPR017884 -
Seca8g02304 158 CDD SANT 2 41 IPR001005 -
Seca8g02304 158 PANTHER TRANSCRIPTION FACTOR KUA1 4 94 - -
Seca8g02304 158 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 46 IPR017930 -
Seca8g02304 158 Pfam Myb-like DNA-binding domain 5 41 IPR001005 -
Seca8g02304 158 NCBIfam myb-like DNA-binding domain, SHAQKYF class 4 45 IPR006447 GO:0003677
Seca8g02304 158 SUPERFAMILY Homeodomain-like 4 46 IPR009057 -
Seca8g02304 158 Gene3D - 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02304 Seca-Chr8 49819650 49820126 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02304 Myb_DNA-binding 8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02304 - - gmx:100783469 145.591