Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02288 ATGGATGATCCCAGAGACCAATTTCCTATAGGAATGCGTGTTCTTGCTGTTGATGATGACCCAACATGTCTCATGGTTTTGGAGACTCTGCTCAGAAGATGTCAATACAATGTAACTGCAACTAAAAATGCAATATCGGCACTGAAATTGTTGAGAGAAAACAAGAACAGGTTTGACTTGGTAATCAGTGATGTTCACATGCCAGACATGGATGGCTTTAAGCTGCTTGAGCTTGTGGGTCTTGAGATGGACCTACCTGTCATAATGTTGTTTGTAAATGATGACCAAAAGATGGTGATGAAGGGAATAACTCATGGAGCTTGTGATTATTTGCTGAAACCTGTTAGAATTGAGGAGTTAGCGAACATTTGGCAGAACATTTGGCAGCATGTAATAAGGAGGAAGAAGATTGACTTGAAGGAGCTGAACAAAACCAGCAATGAAGACACACTTAATTCTTGTAACAGCAATGGACAAGGATCAGCACCAACAACAAATTCAGATCAAAATGAAAAGCCATCCAAAAAAAAGAAAGGATCATGA 543 0.3959 MDDPRDQFPIGMRVLAVDDDPTCLMVLETLLRRCQYNVTATKNAISALKLLRENKNRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLFVNDDQKMVMKGITHGACDYLLKPVRIEELANIWQNIWQHVIRRKKIDLKELNKTSNEDTLNSCNSNGQGSAPTTNSDQNEKPSKKKKGS. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02288 180 MobiDBLite consensus disorder prediction 147 169 - -
Seca8g02288 180 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 166 IPR045279 GO:0009736
Seca8g02288 180 SMART REC_2 12 124 IPR001789 GO:0000160
Seca8g02288 180 MobiDBLite consensus disorder prediction 147 180 - -
Seca8g02288 180 SUPERFAMILY CheY-like 11 136 IPR011006 -
Seca8g02288 180 CDD REC_typeB_ARR-like 14 128 - -
Seca8g02288 180 Gene3D - 12 169 - -
Seca8g02288 180 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Seca8g02288 180 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02288 Seca-Chr8 49698952 49700798 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02288 6 178 Response Regulator Gene Family AT2G25180 64.740 6.03e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g02288 Response_reg 6.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02288 - K14491 gmx:100777171 291.582