Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02260 ATGGGAGTTTCGAAGTATGGCAAAGGGCACTGGAAAAACATTGCTCACCATTATGTAATCACAAAGACCCCCACCCAAGTGGCAAGCCATGCTCAAAAGTACTACCTAAGGCAAAACCTTTCGGGAGGGAAAAGGAAGAGATCTAGTATCCATGATATCACCATTGATAACCTTAAAACTTCAAGTCAAGACAAGCCAGCTATTTTGTTCAATGAGTCTCACATGCCAAATGTGCAACCACAAGAAGGGATTAATCACCACAATGTGTTAGAGCCACTCGTGCAGAATGAAGAGCCACTCATGCAGGTTTTCAACCCAAATTATGATGATATGTTCTTGTCTTCCTCATATGACATCCATTCCGAGTTTCAAGTTCTGGAAGATCTATATAACTCTGCTTTTCATCAGCCTTATGCCCAACAAGGTTTCACAATGGCTTCTAATGACTTCAACATGGACCCTATTTTTGGTATTCATGCACCGTGA 486 0.4156 MGVSKYGKGHWKNIAHHYVITKTPTQVASHAQKYYLRQNLSGGKRKRSSIHDITIDNLKTSSQDKPAILFNESHMPNVQPQEGINHHNVLEPLVQNEEPLMQVFNPNYDDMFLSSSYDIHSEFQVLEDLYNSAFHQPYAQQGFTMASNDFNMDPIFGIHAP. 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02260 161 NCBIfam myb-like DNA-binding domain, SHAQKYF class 2 38 IPR006447 GO:0003677
Seca8g02260 161 CDD SANT 2 34 IPR001005 -
Seca8g02260 161 Pfam Myb-like DNA-binding domain 2 34 IPR001005 -
Seca8g02260 161 SUPERFAMILY Homeodomain-like 2 39 IPR009057 -
Seca8g02260 161 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 39 IPR017930 -
Seca8g02260 161 ProSiteProfiles SANT domain profile. 1 39 IPR017884 -
Seca8g02260 161 Gene3D - 1 40 - -
Seca8g02260 161 PANTHER TRANSCRIPTION FACTOR KUA1 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02260 Seca-Chr8 49511829 49513012 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02260 Myb_DNA-binding 4.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02260 - - ccaj:109813886 144.05