Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02257 ATGGGAGTTTCGAAGTATGGCAAAAGGCACTGGAGAAACATCGCTCACCATTATGTAATCACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTACCTAAGGCAAAACCTTTCGGGAGGGAAGAGGAAGAGGTCTAGTATCCATGATATCACCACTGATAACCTTAAAACTTCAGGTCAAGACAAGCCAGCTATTTTGTTCAATGAGTCTCACATGCCAAATGTGCAACCACAAGAAGGGATTAATCACCACAATGAATTAGAGCCACTCATGCAGGTTTTCAACCCAAATTACGATGATACGTTCTTGTCTACCTCATCTGACATCTATTCTCACTTTCAAGTTCAGGGAGATCTATACAACTGTGCTTTTCATCAGCCTTATGCCCAACAAGGTTTCACAATGGCTTCCAATGATAACTTCGATTGTGCTTTTGGCTTCCAATGA 456 0.4211 MGVSKYGKRHWRNIAHHYVITKTPTQVASHAQKYYLRQNLSGGKRKRSSIHDITTDNLKTSGQDKPAILFNESHMPNVQPQEGINHHNELEPLMQVFNPNYDDTFLSTSSDIYSHFQVQGDLYNCAFHQPYAQQGFTMASNDNFDCAFGFQ. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02257 151 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 39 IPR017930 -
Seca8g02257 151 Gene3D - 1 40 - -
Seca8g02257 151 CDD SANT 2 34 IPR001005 -
Seca8g02257 151 Pfam Myb-like DNA-binding domain 2 34 IPR001005 -
Seca8g02257 151 SUPERFAMILY Homeodomain-like 2 39 IPR009057 -
Seca8g02257 151 PANTHER TRANSCRIPTION FACTOR KUA1 1 85 - -
Seca8g02257 151 NCBIfam myb-like DNA-binding domain, SHAQKYF class 2 38 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02257 Seca-Chr8 49506315 49506770 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02257 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02257 - - gmx:100783469 137.117