Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02254 ATGGAATCTGAAGATCTTTATGCATCTATTTTTGCGCCAAATTCAAATGGGTTTGTTCAAGAGACAATCACAGAATGGAGCAAAGAATTGGTAGAAGATGTGAGTAAGATAGAAGCTGCAGGAGGGGTTCCAGTTCCTGCATATCCTTTCTCCATGGAGATGGTTGACAACCTGCAGGGTCATGATGGATGCAACAAGAGGCCTGCAACTGCCAAAGAGAGGAAGAAAGGGGTTCGTTGGACAAAAGAGGAGCACACACGTTTTCTGATGGGAATTTCTAAGTATGGCAAAGGGCACTGGAGAGATATCCCTCACAATTATGTAATCACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGCACTACATAAGGCAAAACCTTTCTGGAGGGAAAAGGAAGAGATCTAGTATCCATGATATCACCATTGATAACCTTAAAACTTCAGGTCAAGACAAGCCAGCTATTTTGTTCAATGAGTCTCACATGCCAAATGTGCAACCACAAGAAGGGATTAATCACCACAATGTGTTAGAGCCACGCATGCAGAATGAAGGGCCAATTTATGATGATATGTTCTTGTCTTCCTCATATGACATCTATTCTGAGTTTCAACTATACAACTGTGTTTTTCATCAGCCTTATGCCCAACAAGGTTTCACAATGGCTTCTAATGACTTCTACTGTGCTTTTCATCAGCCTTATGCCCAACAAGGTTTCACAGTGGCTTCTAATGACTTCAACAACATTAGATGA 759 0.4177 MESEDLYASIFAPNSNGFVQETITEWSKELVEDVSKIEAAGGVPVPAYPFSMEMVDNLQGHDGCNKRPATAKERKKGVRWTKEEHTRFLMGISKYGKGHWRDIPHNYVITKTPTQVASHAQKHYIRQNLSGGKRKRSSIHDITIDNLKTSGQDKPAILFNESHMPNVQPQEGINHHNVLEPRMQNEGPIYDDMFLSSSYDIYSEFQLYNCVFHQPYAQQGFTMASNDFYCAFHQPYAQQGFTVASNDFNNIR. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02254 252 SMART sant 76 126 IPR001005 -
Seca8g02254 252 NCBIfam myb-like DNA-binding domain, SHAQKYF class 75 127 IPR006447 GO:0003677
Seca8g02254 252 ProSiteProfiles Myb-like domain profile. 72 124 IPR001005 -
Seca8g02254 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 128 IPR017930 -
Seca8g02254 252 Pfam Myb-like DNA-binding domain 79 123 IPR001005 -
Seca8g02254 252 Gene3D - 78 129 - -
Seca8g02254 252 SUPERFAMILY Homeodomain-like 74 128 IPR009057 -
Seca8g02254 252 FunFam transcription factor MYB1R1 78 129 - -
Seca8g02254 252 PANTHER TRANSCRIPTION FACTOR KUA1 21 173 - -
Seca8g02254 252 CDD SANT 79 123 IPR001005 -
Seca8g02254 252 ProSiteProfiles SANT domain profile. 79 128 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02254 Seca-Chr8 49472066 49472975 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02254 Myb_DNA-binding 2.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02254 - - gmx:100788982 197.978