Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02252 ATGGAATTTGAAGATCTTTATGCATCTATTTTTGCGCCAAATTCAAATGGGTTTATTCAAGAGACAATCTCAGAATGGAGTAGAGAAATGGTAGAAGATGTGAGTAAGATAAAAGCTGCAGTAGGGGTTCCAGTTCCTGCATATCCTTTCTCCACGGAGATGGTTGACAACCTGCAGGGTCATGATGGATGCAAAAAGAGGTCTGCAACTGCCAAAGAGAGGAAGAAAGGGGTTCGTTGGACAAAAGAGGAGCACACCCAAAAGGCCAAGAAAGGTATAGTTTTACATTCTTTTCTGGCTATTGATTATCTTGTTTTGGTTCACATGGATTTCAGACGTTTTCTTATGGGAGTTTCGAAGTACGACAAAGGGCACTGGAAAAACATCGCTCACCATTATGTAATCACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTACCTAAGGCAAAACCTTTCTGGAGGGAAAAGGAAGAGGTCTAGTATCCATGATATCACTATTGATAACCTTAAAACTTCAGGTCAAGACAAGCCAGCTATTTTGTTCGATGAGTCTCACATGCCAAATGTGCAACCACAAAAAGGGATTAATCACCACAATGTGTTAGAGCCACTCATGCAGAATGAAGAGCCACTCATGCAGGTTTTCAACCCAAATTATGATGATATGTTCTTGTCTTCCTCATATGACATCTATTCTGAGTTTCAAGTTCTGGAAGATCTATACAACTGTGCTTTTCATCACCCTTATGCCCAACAAGGTTTCACAATGGCTTCTAATGACTTCAACATGGACCCTACTTTTGGTATTCATGCACCGTGA 831 0.4091 MEFEDLYASIFAPNSNGFIQETISEWSREMVEDVSKIKAAVGVPVPAYPFSTEMVDNLQGHDGCKKRSATAKERKKGVRWTKEEHTQKAKKGIVLHSFLAIDYLVLVHMDFRRFLMGVSKYDKGHWKNIAHHYVITKTPTQVASHAQKYYLRQNLSGGKRKRSSIHDITIDNLKTSGQDKPAILFDESHMPNVQPQKGINHHNVLEPLMQNEEPLMQVFNPNYDDMFLSSSYDIYSEFQVLEDLYNCAFHHPYAQQGFTMASNDFNMDPTFGIHAP. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02252 276 Gene3D - 108 155 - -
Seca8g02252 276 Pfam Myb-like DNA-binding domain 113 149 IPR001005 -
Seca8g02252 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 154 IPR017930 -
Seca8g02252 276 CDD SANT 110 149 IPR001005 -
Seca8g02252 276 PANTHER TRANSCRIPTION FACTOR KUA1 22 200 - -
Seca8g02252 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 112 153 IPR006447 GO:0003677
Seca8g02252 276 SUPERFAMILY Homeodomain-like 112 154 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02252 Seca-Chr8 49452940 49453843 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02252 Myb_DNA-binding 1.7e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02252 - - ccaj:109813886 192.971