Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02250 ATGGAATTTGAAGATCTTTATGCATCTTGTTTTGCACCAAATTCAAATAGATTTGTTCAAGAGACAATCACAGAATGGAGTAGAGAAATGGTAGAAGATGTGAGGGAACCTTTCAAGGTATATATGGAATTTGAAGATCTTTATGCATCTATTTTTGCGCCAAATTCAAATGGGTTTGTTCAAGAGACAATCACAGAATGGAGCAAAGAATTGGTAGAAGATGTGAGTAAGATAGAAGCTGCAGGAGGGGTTCCAGTTCCTGCATATCCTTTCTCCATGGAGATGGTTGACAACCTGCAGGGTCATGATGGATGCAACAAGAGGCCTGCAACTGCCAAAGAGAGGAAGAAAGGGGTTCGTTGGACAAAAGAGGAGCACACACGTTTTCTGATGGGAGTTTCGAAGTATGGCAAAAGGCACTGGAGAAACATCGCTCACCATTATGTAATCACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTACCTAAGGCAAAACCTTTCGGGAGGGAAGAGGAAGAGGTCTAGTATCCATGATATCACCACTGATAACCTTAAAACTTCAGGTCAAGACAAGCCAGCTATTTTGTTCAATGAGTCTCACATGCCAAATGTGCAACCACAAGAAGGGATTAATCACCACAATGAATTAGAGCCACTCATGCAGGTTTTCAACCCAAATTATGATGATACGTTCTTGTCTACCTCATCTGACATCTATTCTCACTTTCAAGTTCAGGGAGATCTATACAACTGTGCTTTTCATCAGCCTTATGCCCAACAAGGTTTCACAATGGCTTCCAATGATAACTTCGATTGTGCTTTTGGCTTCCAATGA 846 0.4149 MEFEDLYASCFAPNSNRFVQETITEWSREMVEDVREPFKVYMEFEDLYASIFAPNSNGFVQETITEWSKELVEDVSKIEAAGGVPVPAYPFSMEMVDNLQGHDGCNKRPATAKERKKGVRWTKEEHTRFLMGVSKYGKRHWRNIAHHYVITKTPTQVASHAQKYYLRQNLSGGKRKRSSIHDITTDNLKTSGQDKPAILFNESHMPNVQPQEGINHHNELEPLMQVFNPNYDDTFLSTSSDIYSHFQVQGDLYNCAFHQPYAQQGFTMASNDNFDCAFGFQ. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02250 281 Pfam Myb-like DNA-binding domain 120 164 IPR001005 -
Seca8g02250 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 169 IPR017930 -
Seca8g02250 281 SUPERFAMILY Homeodomain-like 115 169 IPR009057 -
Seca8g02250 281 PANTHER TRANSCRIPTION FACTOR KUA1 62 215 - -
Seca8g02250 281 Gene3D - 119 170 - -
Seca8g02250 281 CDD SANT 120 164 IPR001005 -
Seca8g02250 281 SMART sant 117 167 IPR001005 -
Seca8g02250 281 ProSiteProfiles Myb-like domain profile. 113 165 IPR001005 -
Seca8g02250 281 NCBIfam myb-like DNA-binding domain, SHAQKYF class 116 168 IPR006447 GO:0003677
Seca8g02250 281 ProSiteProfiles SANT domain profile. 120 169 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02250 Seca-Chr8 49436755 49442087 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02250 Myb_DNA-binding 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02250 - - gmx:100783469 227.639