Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02236 ATGGATGAAGTTGCAGGAGGGGTTCCAGTTCCTGCATATCCTTTCTCCATAGAGATGGTTGACAACCTGCAGGGTCATGGTGGATGCAAAAAGAGGCCTGCAACTGCCAAAGAGAGGAAGAAAGGGGTTCGTTGGACAAAAGAGGAGCACACACGTTTTCTGATGGGAGTTTCGAAGTATGGCAAAGGGCACGGGAGAGATATCGCTCACAATTATGTAATCACAAAGACTCCTACCCTAGTGGCAAGCCATGCTCAAAAGCACTACATAAGGCAAAACCTTTCTGGAGGGAAAAGGAAGAGATTTAGTATCCATGATATCACCATTGATAACCTTAAAACTTCAGGTCAAAACAAGCCAGCTATTTTGTTCAATGAGACTCACATGCCAAATGTGCAACCACAAGAAGGGATTAATCACCACAATGTGTTAGAGCCACTCATGCAGAATGAAGAGCCAGTTTATGATGATATGTTCTTGTCTTCCTCATATGAAATCTATTCCGAGTTTCAAGTTCTGGAAGATCTATACAACTGTGTTTTTCATCAACCTTATGCCCAACAAGGTTTCACAATGGCTTCTAATGACTTCGACTGTGCTTTTCATTAG 609 0.4253 MDEVAGGVPVPAYPFSIEMVDNLQGHGGCKKRPATAKERKKGVRWTKEEHTRFLMGVSKYGKGHGRDIAHNYVITKTPTLVASHAQKHYIRQNLSGGKRKRFSIHDITIDNLKTSGQNKPAILFNETHMPNVQPQEGINHHNVLEPLMQNEEPVYDDMFLSSSYEIYSEFQVLEDLYNCVFHQPYAQQGFTMASNDFDCAFH. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02236 202 Pfam Myb-like DNA-binding domain 44 88 IPR001005 -
Seca8g02236 202 NCBIfam myb-like DNA-binding domain, SHAQKYF class 40 92 IPR006447 GO:0003677
Seca8g02236 202 Gene3D - 43 94 - -
Seca8g02236 202 SUPERFAMILY Homeodomain-like 39 93 IPR009057 -
Seca8g02236 202 PANTHER TRANSCRIPTION FACTOR KUA1 6 139 - -
Seca8g02236 202 SMART sant 41 91 IPR001005 -
Seca8g02236 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 93 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02236 Seca-Chr8 49317849 49318718 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02236 Myb_DNA-binding 4.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02236 - - gmx:100783469 181.8