Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02235 ATGGATGATCCCAGAGACCAGTTTCCTATAGGAATGCGTGTTCTTGCTGTTGATGATGACCCAACATGTCTCATGGTTTTGGAGACTCTGCTCAGAAGATGTCAATACAATGTAACTGCAACTAAAAATGTAATATCGGCACTGAAATTGTTGAGAGAAAACAAAAACAGGTTTGACTTGGTAATCAGTGATGTTCACATGCCAGACATGGATGGCTTTAAACTGTTTGAGCTTGTGGGTCTTGAGATGGACCTACCTGTCATAAGTAAGTGA 273 0.4066 MDDPRDQFPIGMRVLAVDDDPTCLMVLETLLRRCQYNVTATKNVISALKLLRENKNRFDLVISDVHMPDMDGFKLFELVGLEMDLPVISK. 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02235 90 ProSiteProfiles Response regulatory domain profile. 13 90 IPR001789 GO:0000160
Seca8g02235 90 Gene3D - 2 89 - -
Seca8g02235 90 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 88 IPR045279 GO:0009736
Seca8g02235 90 SUPERFAMILY CheY-like 11 88 IPR011006 -
Seca8g02235 90 Pfam Response regulator receiver domain 14 88 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02235 Seca-Chr8 49316328 49317124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02235 6 88 Response Regulator Gene Family AT2G25180 79.518 3.95e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g02235 Response_reg 8.2e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02235 - K14491 gmx:100803879 159.458