Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02224 ATGGAAAGATCTGGGTGTCGGCAGTTTAGTTTGAAGAATTTGGCTGAATCACTAAAATCACTAGGTAACAAGGCAATGCAATTCAAGCATTACTCTGATGCAATTGAGTTGTATAATTGTGCAATCGCGCTATATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACTCAAATTAACAAATATACAGAAGCAATCCAAGATTGTCTTAGATCTATCGAGATTGATCCGAACTACAGCAAGGCATACAGTCGTCTAGGTTTAGCTTATTATGCACTAGGAAACTACAGAGATGCTATTGATAAAGGGTTTAAAAGAGCCTTGCAGTTGGATCCAAATAATGAGTCTGTTAAAGAAAATATACGGGTAGCTGAGCGTAAATTGATAGAAGAGCAACATCATGCAGATCACAATCAGAATTCAAGATCATCCCAAGAATTTCCAAACCAATCTGCAAGAGGATCAAGAAGTCATGCAGCGCCTCCAACATTTACCTCAATGCCATTTAACCCCAATGATCTTGCAAGCATGTTCATGAACATAGCAGCAAATGCTACAAATGCTTATCAGGGGTCACATCCTCAGGAAAGGCCAGAAGAAACCAATCCTAGTGGAGCCAATGAACCTGAAATAAGAATTGGGGGCAATGTTAGCCTAAACTTCGATCAAATGCCTCAGGATCTAACAGGGGCTTTTCAATCTGTGATGGAAATGTTATCTGGGAATGTACCCCCTGGGCAACCACAAGATCAAACAAATGGAAGAACAGCACCAAACTAA 789 0.4043 MERSGCRQFSLKNLAESLKSLGNKAMQFKHYSDAIELYNCAIALYEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYSKAYSRLGLAYYALGNYRDAIDKGFKRALQLDPNNESVKENIRVAERKLIEEQHHADHNQNSRSSQEFPNQSARGSRSHAAPPTFTSMPFNPNDLASMFMNIAANATNAYQGSHPQERPEETNPSGANEPEIRIGGNVSLNFDQMPQDLTGAFQSVMEMLSGNVPPGQPQDQTNGRTAPN. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02224 262 MobiDBLite consensus disorder prediction 136 171 - -
Seca8g02224 262 Gene3D Tetratricopeptide repeat domain 10 170 IPR011990 GO:0005515
Seca8g02224 262 SMART tpr_5 15 48 IPR019734 GO:0005515
Seca8g02224 262 SMART tpr_5 83 117 IPR019734 GO:0005515
Seca8g02224 262 SMART tpr_5 49 82 IPR019734 GO:0005515
Seca8g02224 262 Pfam Tetratricopeptide repeat 84 117 IPR013105 -
Seca8g02224 262 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 10 157 - -
Seca8g02224 262 ProSiteProfiles TPR repeat profile. 49 82 IPR019734 GO:0005515
Seca8g02224 262 MobiDBLite consensus disorder prediction 247 262 - -
Seca8g02224 262 Pfam Tetratricopeptide repeat 49 82 IPR001440 GO:0005515
Seca8g02224 262 MobiDBLite consensus disorder prediction 192 215 - -
Seca8g02224 262 SUPERFAMILY TPR-like 14 128 IPR011990 GO:0005515
Seca8g02224 262 MobiDBLite consensus disorder prediction 242 262 - -
Seca8g02224 262 ProSiteProfiles TPR repeat profile. 83 117 IPR019734 GO:0005515
Seca8g02224 262 MobiDBLite consensus disorder prediction 144 171 - -
Seca8g02224 262 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Seca8g02224 262 PANTHER LD24721P 10 252 IPR047150 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02224 Seca-Chr8 48965598 48971478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02224 14 113 U-box Gene Family AT3G07370 33.000 5.27e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02224 K16365 - gmx:100799770 427.172