Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02203 ATGAGGGTAGAGAAGACAAAATGGAATGTGGTGATGATTGGTGATGGAATGACTGCTACAATTGTATCTGGCAGGCGTAACTTTGTGGATGGCACCCCAACATTTTCAAGTGCAACATTTGCTGTGTTTGGAAGGAATTTCATAGCTAGAGACATGGGATTTCGCAACACAGCTGGTCCTCAGAAGTATCAAGCAGTAGCACTGATGACAAGTGCTGATCAGGCAGTGTACTATAGGTGTCACATTGATGCATTTGACGACACTCTCTATGCGCATTCCAATCGCCAATTCTATAGAGAATGCAACATCTATGGGACAATTGATTTCATTTTTGGAAATTATGCTGTTGTGATCCAAAACTGCAATATTTTTCCAAAGTTACCTATGCATGGCCAGCATAACACAATCACAGCACAGGGAAAATTTCACCCTAACATGAACACAGGGATCTCAATTAAAAATTGCAACATTTCACCCTTCGGGAACTTGAGTACTGTCCAAACATACCTCGGAAGACCCTGGAAGAATTACTCAACCACAGCGTACATGACATCAGTCACAGTAAAGCTTGGACTATCACACAGAAGGAATTTCAAGTCAAAGATGTGGTTGTTACCTAGAATAACATTCAAATCTTCACTTTTCTTTTTTATCTTTATTCATACCCCTAATTAA 675 0.4 MRVEKTKWNVVMIGDGMTATIVSGRRNFVDGTPTFSSATFAVFGRNFIARDMGFRNTAGPQKYQAVALMTSADQAVYYRCHIDAFDDTLYAHSNRQFYRECNIYGTIDFIFGNYAVVIQNCNIFPKLPMHGQHNTITAQGKFHPNMNTGISIKNCNISPFGNLSTVQTYLGRPWKNYSTTAYMTSVTVKLGLSHRRNFKSKMWLLPRITFKSSLFFFIFIHTPN. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02203 224 PANTHER PECTINESTERASE 3 186 - -
Seca8g02203 224 Gene3D - 1 195 IPR012334 -
Seca8g02203 224 FunFam Putative pectinesterase 57 1 155 - -
Seca8g02203 224 SUPERFAMILY Pectin lyase-like 3 186 IPR011050 -
Seca8g02203 224 Pfam Pectinesterase 2 186 IPR000070 GO:0030599|GO:0042545
Seca8g02203 224 ProSitePatterns Pectinesterase signature 2. 103 112 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02203 Seca-Chr8 48597673 48598397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02203 1 185 Carbohydrate Esterase AT5G04960 68.108 1.08e-93 283