Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02192 ATGTTTCCAGATTCTTCTAAGAAAGATGAGCAGCTGAAAACAAAAAATCAAGCATTTCATTACTCAGAAGTTCTTAGTATCACTAATAATTTCAATACAATGATTGGAAAAGGTAGATTTGGTAAGGCTTACCTAGGTATTCTACAGGGTGGCAAAAGAGTTGCCGTAAAAATACTTTCATTGTCATCAATGCAGGGGTATAAGGAGTTTAAGTCAGAGGCAAAATTATTGATGCTTGTGCATCATAGAAACGTAGTTTCTCTTGTGGGGTACTGTGATGAAGGTGACATTAAAGCACTTATTTATGAATATCTCTCACGAGGGAACCTCCAGCAACAATTGTCAGGTTTTGCAAGTCACGTGCTTTAA 369 0.3659 MFPDSSKKDEQLKTKNQAFHYSEVLSITNNFNTMIGKGRFGKAYLGILQGGKRVAVKILSLSSMQGYKEFKSEAKLLMLVHHRNVVSLVGYCDEGDIKALIYEYLSRGNLQQQLSGFASHVL. 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02192 122 FunFam Leucine-rich repeat receptor-like protein kinase 7 104 - -
Seca8g02192 122 Pfam Protein tyrosine and serine/threonine kinase 31 115 IPR001245 GO:0004672|GO:0006468
Seca8g02192 122 Gene3D Phosphorylase Kinase; domain 1 10 104 - -
Seca8g02192 122 PANTHER OS07G0107800 PROTEIN-RELATED 14 112 - -
Seca8g02192 122 ProSitePatterns Protein kinases ATP-binding region signature. 35 57 IPR017441 GO:0005524
Seca8g02192 122 SUPERFAMILY Protein kinase-like (PK-like) 13 118 IPR011009 -
Seca8g02192 122 ProSiteProfiles Protein kinase domain profile. 29 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02192 Seca-Chr8 48322983 48323475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02192 14 122 Receptor kinase-like Gene Family AT1G51830 55.963 1.74e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca8g02192 PK_Tyr_Ser-Thr 1.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02192 - - vum:124820758 168.318