Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02187 ATGACGGATCAAAATGCAAGTGGTGGTTTCAGCTCGATGCTCCGTAAGATTAAACCTTACCTTGCTATGGTGTCTCTTCAATTTGGCTACTCCGGAATGTATATCATCACTATGGTTTCATTCAAGCATGGCATGAGCCATTGGGTTCTCTCTGTGTATCGTCATGTCGTTGCCACTCTCGTTATGGCCCCTTTTGCGCTTGTCCTTGAAAGAAAAATAAGGCCAAAGATGACTCTCCCAATCTTCCTGAGATTAGCACTTCTCGGTTTCCTTGAGCCAGTGCTTGATCAAAACTTGTACAACATGGGGATGAAGAGCACCTCTACAACGTTTGCATCAGCCACCATTAATGTCCTCCCAGCCATTACTTTTATAATGGCTCTCATTTTCAGGTTAGAGTCAGTGAATTTGAAGAAAATTCACAGCCTGGCTAAGGTAATTGGAACTGCAGTAACAGTCTCAGGAGCCATGGTTATGACTTTGTATAAAGGCCCTGCTCTTCAGATCATAAAGGGACAAGGTGCAAGCCACCATGACAGTGCTAGCACAGAGCCCTCTGAACAAAACTGGGTTCTTGGCACACTAATGCTCATAGCAAGTTGTGGTGGTTGGGCTAGCTTCTTTATCTTGCAATCCTTCACTTTGAAGATGTACCCAGCAGAGCTCTCTGTCACAGCTTGGATTTGCTTTTTGGGTATTTTTGAGGGTGCAATTGCAACATTTATATTTGAACGTGACATGAGTGTTTGGTCTTTAGGCTGGGACTCAAGGCTTCTGGCTTGTGTTTATTCTGGGGTGGTGTGTTCTGGAATGGCATACTATGTACAAGGAGTTGTGACCAGGGAACGTGGACCTGTGTTTGTCACATCTTTTAGCCCTCTCTGTATGATAATCACTGCTGCATTGGGTTCCATTGTCTTGGCTGAGCAAACTCATCTAGGAAGTATAATTGGGGCTATTATCATTGTATGTGGGCTTTATACTGTGGTATGGGGAAAGAGCAAAGACAGTGTGAACACAACAGATGCAGGGAAAGGTGAGGGCCAAGAATTGCCAATTAAGGATGGTACAAGATCAGGATCAGACATTTTTGATAGTATTGAGGTCAATGTTCCTGGTGAGATGAAAGGGGCAGGAAAAAATGTGCAATCATCAGCAAGATCATAG 1167 0.4396 MTDQNASGGFSSMLRKIKPYLAMVSLQFGYSGMYIITMVSFKHGMSHWVLSVYRHVVATLVMAPFALVLERKIRPKMTLPIFLRLALLGFLEPVLDQNLYNMGMKSTSTTFASATINVLPAITFIMALIFRLESVNLKKIHSLAKVIGTAVTVSGAMVMTLYKGPALQIIKGQGASHHDSASTEPSEQNWVLGTLMLIASCGGWASFFILQSFTLKMYPAELSVTAWICFLGIFEGAIATFIFERDMSVWSLGWDSRLLACVYSGVVCSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSIVLAEQTHLGSIIGAIIIVCGLYTVVWGKSKDSVNTTDAGKGEGQELPIKDGTRSGSDIFDSIEVNVPGEMKGAGKNVQSSARS. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02187 388 Pfam EamA-like transporter family 31 151 IPR000620 GO:0016020
Seca8g02187 388 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020
Seca8g02187 388 PANTHER WAT1-RELATED PROTEIN 19 337 IPR030184 GO:0016020|GO:0022857
Seca8g02187 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 334 - -
Seca8g02187 388 MobiDBLite consensus disorder prediction 339 360 - -
Seca8g02187 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02187 Seca-Chr8 47830342 47833948 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02187 14 355 Nodulin-like Gene Family AT4G08300 66.667 1.37e-168 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02187 - - gmx:100814921 660.603