Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02179 ATGGGAAAATTGTTATGTGGTGGTGGCAATTTTGGTGAAATGTTCAATCAGGCTAAGCCTTATTTGTTAACTGTGGGGTTGCAATTTGGGATGGCTGGAACTTACATCTTCACTATGGCTAGTTTGAATCATGGAATGAGTCGTTTGGTTTTCATTGTTTATCGTAATGCCATTGCTGCGTTTGCACTCGCTCCTTTTGCATTGATCTTTGAAAGGAAAATTAGGCCAAAGATGACACTCTCTGTCTTCATACAGATACTAGCTCTTGGATTTCTTGAGCCAGTGGTTGATCAAGGCTTCACTTTCTTGGGGATGCAATACACTTCGGCTTCATTTGCTTCTGCTGTCATGAACGCCGTTCCCTCAGTTACCTTTGTGTTAGCAGTGATTCTCAGGTTAGAGCGAGTAAGAATCAAGGAGTTACGAAGTCAAGCAAAGGTGATTGGAACCTTGGCAACCTTTATAGGGGCTTTGTTAATGACACTATACAAAGGCCCTCAAATCCACTTATTTCATGATCCAAGCTCAACCCATCATCAAGATGGAGGTCACTCAGCTCAAAGTCAGCAACACTGGGTCACAGGGACTCTCTTCATAGGCCTTGGTTGTCTAGCTTGGTCTTCTTTCTACATTTTGCAGTCCATAACAGTGACAAAGTACCCTGCGGAACTATCACTATCATGCTTGATATGCTTGATGGGTGCTTTGCAAAGTGCAGTGGTTGCTTTGATTGCAGATCATCACCCTCATGCATGGGCTATTGGTTTTGACTATAGACTCTATGGCCCTCTCTACACTGGAATAATGAGTTCAGGAATAGCATATTATATACAAGCTTTGGTAATGAAAAGCAGGGGTCCAGTTTTTGTAACATCCTTTAATCCTCTTTGCATGATCATTGTTGCTGCTTTGGGTTCCTTCCTTCTAGGAGAGCATCTCTACTTGGGAAGTATTATTGGAAGCATCATTATCGCAGTGGGACTTTATTCTGTGGTGTGGGGTAAAGGGAAAGACTATACAGACCTCTCAGAGTCATCAGAAACAATAAAAGGAGCAGAAAAACAACAGCTGCCAATTACCTCATCACCAACAACAGAGAAATAA 1104 0.4221 MGKLLCGGGNFGEMFNQAKPYLLTVGLQFGMAGTYIFTMASLNHGMSRLVFIVYRNAIAAFALAPFALIFERKIRPKMTLSVFIQILALGFLEPVVDQGFTFLGMQYTSASFASAVMNAVPSVTFVLAVILRLERVRIKELRSQAKVIGTLATFIGALLMTLYKGPQIHLFHDPSSTHHQDGGHSAQSQQHWVTGTLFIGLGCLAWSSFYILQSITVTKYPAELSLSCLICLMGALQSAVVALIADHHPHAWAIGFDYRLYGPLYTGIMSSGIAYYIQALVMKSRGPVFVTSFNPLCMIIVAALGSFLLGEHLYLGSIIGSIIIAVGLYSVVWGKGKDYTDLSESSETIKGAEKQQLPITSSPTTEK. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02179 367 PANTHER WAT1-RELATED PROTEIN 19 339 IPR030184 GO:0016020|GO:0022857
Seca8g02179 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 336 - -
Seca8g02179 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 54 165 - -
Seca8g02179 367 MobiDBLite consensus disorder prediction 346 367 - -
Seca8g02179 367 MobiDBLite consensus disorder prediction 349 367 - -
Seca8g02179 367 Pfam EamA-like transporter family 31 161 IPR000620 GO:0016020
Seca8g02179 367 Pfam EamA-like transporter family 195 332 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02179 Seca-Chr8 47535777 47540711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02179 12 364 Nodulin-like Gene Family AT4G08300 50.279 3.11e-123 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02179 - - gmx:100777641 560.066