Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02173 ATGGATTCAAATAAAGGAAAGAAAAAGAAGCACAAGGACAGAAAGAAAAAGCATGCAACTGATAAAATACTTAATTCAAATGAAACCCTTGAAGGAAATTGTACTGGTGAAGCGGCTGACAAACAAACTTGCTCTATTGAAGTGATGGATAGTAATGTAGCTGATGGTAAAGAATTGCAGTTCTTGGATGAGAACCAACAAATCAAGATGAAGAAAAGAAAGAAACCGAGCAAAAAAGGCAAAATGACAAAGGATAATAATGAGTTCAAAAGCAATGGAGGTGGAGATGATGACCAAGGCAAGAAGAAGAAGAAGAAACTGAGTGAAGGAGGCAAACATAAGGACTATAATGAGTTCAAAAGCAATGAAGGTGAAGATGATGACCAAGGCAAGAAGATGAAGAAGGAGAAGAAACTGATTAGAGAAAGCAAACTTAAGAAATATAATGAGTTTAGAAGTGATGAATGTGAGGATGGTGACCAAGGCAAGAAGATGAAGAAGAAACTGAGTGATGAAAGCAAAAGTAAGGAGAACAGTGTGTTTAATAGGAATGAAGATGATCCGCCTTTTGCTAGGGTTGAGCCAGAAGATGCCAATGCTCGTTCTGTTGTCACTGAAGTTAATGATCAAGGCAAGGAGATGAAGAAAGAAAAGACAGCTAAGGCAGGTACTGGTGAATCTCCTAACCCTGCACATGATGGAACATCCAAACCCAAACGAGTAACTTTTTCTTATCAAGTTGATGTTTGTTGTGATGGCTTAGTGCGTGGGAAAAGGTTAACACGAGAAGAAGATGACAAGATCAAAGCAGTTGTCATTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTGGATATGGTTCTCCATTGCAAGAAACATCCTGAAGTTAGGGATTATTGGAAGGAAATTGGAGCAGCCTTACCTAATAGACCTCAAATAAGTGTGTATTATCGTGCTCATATTTTGTTTGAAAGGGATGAGAGGCGTAAGTGGACACGTGATGAGCTTGAATTTGTACGGAAGGTCCAGGAACAACATGGATCTGATTGGAAATTGGTAGCTGAAGCTTTGGATAAATGTCGAGTTCATGTAAAGGATGCATGGCGTAGAATAAAATTAACCAATATAAAAAGAGGACGATGGACACAAGAGGAGATTCAAAATTTATTTGATTTAGTAAATCTGGATCTACGTGCGAGGGCTTCAGAAGGCTATAGAAAATCAAAACATGGTAAGTTGCGAGATAATATTAGTTGGGAGGCAATTGGTAGCAAATTGGCCACTAGAACCAGTCAAGTGTGCTGCAAAAAGTGGTATAAGAAATTAGCACCACATATGGTTTCTAAGGGTGAGTGGTCGGACACTGATGACTACCGCTTGGTTAATGCTTTATATGTTTTGGATGCTTGCTGCATGGAGGAGGTAGATTGGGACAATCTGCTTGAGCATAGGTCTGGTGATGTATGCAGAAAACGATGGAACCAAATGGTCCAACAAATTGGAGAGTATGGAGGGAAGCCATTTGCTGAGCAGGTTGAAATTCTTTCCAAGAGATATTCCCCCGACTTATTGGAAGCAAGAGAGGCCTTTGATAACAAACCTGTGGTTTGTTGA 1620 0.3963 MDSNKGKKKKHKDRKKKHATDKILNSNETLEGNCTGEAADKQTCSIEVMDSNVADGKELQFLDENQQIKMKKRKKPSKKGKMTKDNNEFKSNGGGDDDQGKKKKKKLSEGGKHKDYNEFKSNEGEDDDQGKKMKKEKKLIRESKLKKYNEFRSDECEDGDQGKKMKKKLSDESKSKENSVFNRNEDDPPFARVEPEDANARSVVTEVNDQGKEMKKEKTAKAGTGESPNPAHDGTSKPKRVTFSYQVDVCCDGLVRGKRLTREEDDKIKAVVIDYIESHGLGDEGLDMVLHCKKHPEVRDYWKEIGAALPNRPQISVYYRAHILFERDERRKWTRDELEFVRKVQEQHGSDWKLVAEALDKCRVHVKDAWRRIKLTNIKRGRWTQEEIQNLFDLVNLDLRARASEGYRKSKHGKLRDNISWEAIGSKLATRTSQVCCKKWYKKLAPHMVSKGEWSDTDDYRLVNALYVLDACCMEEVDWDNLLEHRSGDVCRKRWNQMVQQIGEYGGKPFAEQVEILSKRYSPDLLEAREAFDNKPVVC. 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02173 539 CDD SANT 382 444 IPR001005 -
Seca8g02173 539 PANTHER GB|AAC33480.1 5 538 - -
Seca8g02173 539 ProSiteProfiles Myb-like domain profile. 451 499 IPR001005 -
Seca8g02173 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 330 378 IPR017930 -
Seca8g02173 539 SMART sant 329 376 IPR001005 -
Seca8g02173 539 SMART sant 450 501 IPR001005 -
Seca8g02173 539 SMART sant 256 327 IPR001005 -
Seca8g02173 539 SMART sant 379 446 IPR001005 -
Seca8g02173 539 Pfam Myb-like DNA-binding domain 333 391 - -
Seca8g02173 539 SUPERFAMILY Homeodomain-like 424 501 IPR009057 -
Seca8g02173 539 SUPERFAMILY Homeodomain-like 330 389 IPR009057 -
Seca8g02173 539 MobiDBLite consensus disorder prediction 208 222 - -
Seca8g02173 539 MobiDBLite consensus disorder prediction 1 38 - -
Seca8g02173 539 Gene3D - 334 372 - -
Seca8g02173 539 ProSiteProfiles Myb-like domain profile. 375 444 IPR001005 -
Seca8g02173 539 ProSiteProfiles Myb-like domain profile. 325 374 IPR001005 -
Seca8g02173 539 MobiDBLite consensus disorder prediction 81 194 - -
Seca8g02173 539 MobiDBLite consensus disorder prediction 57 239 - -
Seca8g02173 539 Gene3D - 373 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02173 Seca-Chr8 47344758 47346422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02173 327 501 MYB Transcription Factor Family AT4G32730 24.859 3.01e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g02173 Myb_DNA-bind_6 9.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02173 - - aprc:113872850 619.772