Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02168 ATGGTTAAGACAGAGAACAAGATCCACACTGAGCCATCAAATCCAACTAGGCCTTTAACTTCACCAAATGACAAGAAGAAGAAGTACAAAGGAGTCAGAATGAGAAGCTGGGGCTCATGGGTATCTGAGATTAGAGCACCAAATCAGAAAACAAGAATATGGCTTGGTTCTTATTCAACTGCAGAAGCAGCAGCCAGAGCCTATGATGCTGCACTTTTATGCCTTAAAGGTTCCTCTGCTAATCTCAACTTCCCTTTGAGTTCTTCACAGTTCATTCCTCAAGACACTTCTGTTATGTCCCCTAAATCAATCCAAAGAGTAGCTGCAGCTGCTGCTAACAGTTTTGTGGACAATGCTAGCACTAGCATTAGCACACCACCTTCTCCTCCTCCTGCTTCAACCTCATCTTCATTGGTTTCATCCCCATCAATGTCATCATCTCCTTCAGATCAAATAGATGATGATGTTTCACTATTTTCATCACTTGGGGCCTACAATAGCTGTGATCAAGTAAATGAATCAATGGCTATGATGGAGTCTTGGTATGGATTTGATGGTTTACAATCCCCAAAACATGTTGATCAAATGCTTAGTGGGGCTTTGTTTGATATTGATTCAACACATTTGCTTGATGATTGGTATGAAGAAAGTGACATTCCTTTGTGGAGCTTCTGCTGA 678 0.413 MVKTENKIHTEPSNPTRPLTSPNDKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPLSSSQFIPQDTSVMSPKSIQRVAAAAANSFVDNASTSISTPPSPPPASTSSSLVSSPSMSSSPSDQIDDDVSLFSSLGAYNSCDQVNESMAMMESWYGFDGLQSPKHVDQMLSGALFDIDSTHLLDDWYEESDIPLWSFC. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02168 225 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Seca8g02168 225 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Seca8g02168 225 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Seca8g02168 225 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Seca8g02168 225 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Seca8g02168 225 MobiDBLite consensus disorder prediction 134 151 - -
Seca8g02168 225 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Seca8g02168 225 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Seca8g02168 225 MobiDBLite consensus disorder prediction 1 30 - -
Seca8g02168 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 166 - -
Seca8g02168 225 MobiDBLite consensus disorder prediction 119 151 - -
Seca8g02168 225 FunFam ethylene-responsive transcription factor ERF014-like 27 87 - -
Seca8g02168 225 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02168 Seca-Chr8 47253463 47254140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02168 1 224 AP2-EREBP Transcription Factor Family AT1G21910 44.402 3.79e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g02168 AP2 4.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02168 - - gmx:100813313 293.893