Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02154 ATGCTTAATGCTTGTGCTAACCAATGCCTAATTGTAGGAATCAATGAAAGAAAAATGGATTGGCCTCTAAGACTCAAAGTGGCATTGGGAGCTGCAAAAGGTCTTGCTTATCTCCAGTCAAGTTCTTGTGTTGGAATTCCTATTTTTCATAGAGATTTAAAATCCACCAACATTCTTTTAATTAATGCCAATTTTGAAGAAAAGGTATAA 210 0.3476 MLNACANQCLIVGINERKMDWPLRLKVALGAAKGLAYLQSSSCVGIPIFHRDLKSTNILLINANFEEKV. 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02154 69 PANTHER OS01G0750732 PROTEIN 10 69 - -
Seca8g02154 69 ProSitePatterns Serine/Threonine protein kinases active-site signature. 48 60 IPR008271 GO:0004672|GO:0006468
Seca8g02154 69 ProSiteProfiles Protein kinase domain profile. 1 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02154 69 Gene3D Transferase(Phosphotransferase) domain 1 1 69 - -
Seca8g02154 69 Pfam Protein tyrosine and serine/threonine kinase 16 62 IPR001245 GO:0004672|GO:0006468
Seca8g02154 69 SUPERFAMILY Protein kinase-like (PK-like) 5 68 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02154 Seca-Chr8 47066903 47067186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02154 18 69 Receptor kinase-like Gene Family AT1G72180 51.923 6.61e-12 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Seca8g02154 PK_Tyr_Ser-Thr 2.3e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02154 - - gmx:100820613 88.1965