Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02127 ATGATTCATTCTCTAATGGTTTCCAAATCCATTCAATTCCTCTTTTTTCTTTGTACTCTTGCTTTTCTTTCACAAGTTGCTTTTGCTGACCCTCCATATGAAATTTGTTCCACAAGCAGCAGCTATGCAAATGGAAGTTCCTTTCAAAGCAATCTAAGGAGCCTCCTCCTCTCTTTGCCCTCCAATGCTTCAATCTCCAAATCCTATAATACTTCTTCCGGATTTGCCCCTGATGGAGTTTATGTCCTCTACATGTGTCTCAACTATGTTTCAAATGAAACTTGCCACAAATGCATAACAACTGCAATAGGAGATATTGTCAAACTCTGTCCTCAATCAAAAGAAGCAGTTGTGTGGGAGGAGTTTTGCCAATTACGTTATTCCAATAACAATTTCCTAGGTAGGTTGAATGTCACAGGGAACATTGGCTTGGACAATAAACTGAATCTTTCAGAACCAGAAAAATTTGAGTCTGCTGTGAATAAGATACTCAATAATCTTACTGAGGTAGCATCTTTTAATGTTTCCTCAAAGAAGTATGCTACTGGAGAAGTACCTTATGAAGATAAAACAATATATGCCTTAGTGCAGTGCACCAGAGATTTATCAGCCAATGATTGCAGTATTTGCTTAAAAAGTGCCATAAGAGAAATACCAGGTTGTTGCTATGCCTCAATTGGTGCCAGAGTTCTTAGTCGTAGCTGTTATTTAAGATATGAATTTTATCCATTTTATCTTGGTGCAACAGAGCCTAATTCCACAGGCTCTTTAATCAGCAATAATGAAGGCAAAAATAATTCAAGCAAAATATGGATGATTACAGCCATGGTAGTTGTGGTAGGCTTGGTGCTGATAATTTTTGTTTGCTTCATGTACTTTGTCAGGAATAAAAGAAATAGGCAAAGTAAGAATGGAATAGACAAAATATCTAAAGACTTCCCTTTTATTGATCTTGGATCTATTCGTGTGGCTACCAAGAACTTTTCTGATTCAAATATGCTTGGACAAGGTGGCTTTGGCCCTGTTTACAAGGGGATACTTAGTGATGGCCAGGAAGTGGCAATCAAGAGGCTCTCAACTTGCTCTGAGCAGGGCTCAGAGGAATTCATAAACGAGGTTATGCTGATAATGAAACTTCAACACAAAAATCTTGTAAAGCTTTTGGGATTTTGTGTAGATGGAGAAGAGAAGATTCTTGTATATGAATTTTTGCCTAATGGTAGCCTCGATGCTGTCCTTTTTGATCCAAAGCAAAAGGCACGGCTTGATTGGAACAAACGCCTGGACATAATAAATGGAATAGCAAAGGGGATTCTTTATCTTCATGAAGATTCTAGACTAAAAATAATTCATAGAGATCTAAAAGCAAGTAATGTGTTGTTGGACTCTGACATGAATCCAAAGATCTCAGACTTTGGAATGGCCAGGATATTTGCAGGAAGTGAAGGTGAAGCTAACACTGCTACAATAGTTGGCACATATGGATATATGGCTCCAGAATATGCAATGGAAGGGTTATATTCCATAAAATCTGATGTTTTTGGCTTTGGAGTTCTATTGCTTGAGATCATCACAGGGAAACGTAACGCGGGTTTCTATCACTCTAAAAACGCTCCTAGCCTTCTAGCATATGCATGGCACCTATGGAATGAGGGAAAGGGGCTAGAGTTAAAGGATCCCTTGTTATCTGATTCATGCCTTGAAGATCAGTTTTTGAGATACATGAATATTGGACTGCTTTGTGTTCAAGAAGATGCATATGATAGGCCAACCATGTCTTCTGTTGTTTTGATGTTGAAGAATGAAACAGTATCACTTGGCCAACCAGAAAGACCTCCTTTCTCTGTAGGGAGGCTCAATGTTAATGATAGTAATTGCGAAGAATGCTCAGTCAATTTCGTAACTATTTCTGATATGATCATGGGCAAAGATAGACCTTCAGCTATGCTTTTGTTGATCATTTTTATGTTATCTATCCACAGCATTTCTGGTGCAGACCTCATAGATACTTATTGTCCAACTGAATTCCCAATTTACACCCCCAACGGTTCATTCCACAAGAATCTCAATCTTCTTATGGAGTCACTCTCCTCCAACACCGCTTCAAGGGGAGGTTTCTATAACACATCTATAGGAAAAGAACCAGACAGTGTGTATGGACAAACACTCTGCAGAGGGGACATCACAAACTCCACAGTTTGCCAGGAATGTGTTCAGAAAGCAAGCAAGGATATAATGAATAGGTGTAAGAGTGAAGATGCAGTGATATGGTATGAGCTTTGCCAAGTTCGCTACTCCTTTCAGATGTTTTTCTCAATCATGGTTTATACTGGAAAATATCCAGAGCAGATTAAGAAGGAGAAGAATGTCTCAGATGATCCTATTAGATTTGAAGAAGTCATGAAGTTTTTAATGAAGAATCTGTCAAATGAGGCAGCTTTTAATCCTGCTAGGAACATGTTTGCTGCTGGGGAAATTGAGTTTCCTAGGAAGAAGACAATTTATGGTCTAGTCCAATGTACCAGGGACATTTCTGAAACAGACTGCAGTAGTTGTTTGAGTACTGCATTTTCAGAATTGACTATATGCTGCTCCCACAGGGAAGGGGGGATTATTGTTACTTTAGCAACCATTAAGGCCGCTACTGGTGACTTTTCTGATACAAATAAGCTTGGACAAGGAGGGTTTGGTGCAGTGTACAAGGGTGTTCTACCAGATGGAAATGAAATAGCAGTTAAAAGACTATCAAGAAAGTCTTGGCAAGGCATAGAGGAATTCAAAAATGAGGTCATACTAATTGCCAAACTTCAACACAGGAATTTGGTTAGATTGTTGGGCTGTGTCTTAGAGGCAGATGAAAAGATACTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAATTTATCTTTGATCCAGAAAAACGTAACAAACTTGATTGGAACACATGCTATGGCATTATCAGTGGCATAGCTAGAGGACTACTTTATCTTCATGAGGAGTCTCGGCTTAAAATCATTCACCGAGACCTAAAGCCAAACAATGTCTTGTTAGACCATGAACTTGTTGCAAAAATATCAGCTTTCCAATTAGCCAATTTTTTATGA 3108 0.3861 MIHSLMVSKSIQFLFFLCTLAFLSQVAFADPPYEICSTSSSYANGSSFQSNLRSLLLSLPSNASISKSYNTSSGFAPDGVYVLYMCLNYVSNETCHKCITTAIGDIVKLCPQSKEAVVWEEFCQLRYSNNNFLGRLNVTGNIGLDNKLNLSEPEKFESAVNKILNNLTEVASFNVSSKKYATGEVPYEDKTIYALVQCTRDLSANDCSICLKSAIREIPGCCYASIGARVLSRSCYLRYEFYPFYLGATEPNSTGSLISNNEGKNNSSKIWMITAMVVVVGLVLIIFVCFMYFVRNKRNRQSKNGIDKISKDFPFIDLGSIRVATKNFSDSNMLGQGGFGPVYKGILSDGQEVAIKRLSTCSEQGSEEFINEVMLIMKLQHKNLVKLLGFCVDGEEKILVYEFLPNGSLDAVLFDPKQKARLDWNKRLDIINGIAKGILYLHEDSRLKIIHRDLKASNVLLDSDMNPKISDFGMARIFAGSEGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFYHSKNAPSLLAYAWHLWNEGKGLELKDPLLSDSCLEDQFLRYMNIGLLCVQEDAYDRPTMSSVVLMLKNETVSLGQPERPPFSVGRLNVNDSNCEECSVNFVTISDMIMGKDRPSAMLLLIIFMLSIHSISGADLIDTYCPTEFPIYTPNGSFHKNLNLLMESLSSNTASRGGFYNTSIGKEPDSVYGQTLCRGDITNSTVCQECVQKASKDIMNRCKSEDAVIWYELCQVRYSFQMFFSIMVYTGKYPEQIKKEKNVSDDPIRFEEVMKFLMKNLSNEAAFNPARNMFAAGEIEFPRKKTIYGLVQCTRDISETDCSSCLSTAFSELTICCSHREGGIIVTLATIKAATGDFSDTNKLGQGGFGAVYKGVLPDGNEIAVKRLSRKSWQGIEEFKNEVILIAKLQHRNLVRLLGCVLEADEKILIYEFMSNKSLDQFIFDPEKRNKLDWNTCYGIISGIARGLLYLHEESRLKIIHRDLKPNNVLLDHELVAKISAFQLANFL. 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02127 1035 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 665 770 - -
Seca8g02127 1035 ProSiteProfiles Gnk2-homologous domain profile. 778 887 IPR002902 -
Seca8g02127 1035 Pfam Protein tyrosine and serine/threonine kinase 332 596 IPR001245 GO:0004672|GO:0006468
Seca8g02127 1035 SUPERFAMILY Protein kinase-like (PK-like) 312 630 IPR011009 -
Seca8g02127 1035 FunFam Cysteine-rich receptor-like protein kinase 10 294 403 - -
Seca8g02127 1035 ProSiteProfiles Gnk2-homologous domain profile. 30 132 IPR002902 -
Seca8g02127 1035 FunFam Cysteine-rich receptor-like protein kinase 28 32 131 - -
Seca8g02127 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Seca8g02127 1035 Pfam Salt stress response/antifungal 792 872 IPR002902 -
Seca8g02127 1035 Pfam Salt stress response/antifungal 151 241 IPR002902 -
Seca8g02127 1035 Pfam Salt stress response/antifungal 677 767 IPR002902 -
Seca8g02127 1035 Pfam Salt stress response/antifungal 36 129 IPR002902 -
Seca8g02127 1035 Gene3D Phosphorylase Kinase; domain 1 290 403 - -
Seca8g02127 1035 ProSitePatterns Protein kinases ATP-binding region signature. 891 913 IPR017441 GO:0005524
Seca8g02127 1035 ProSiteProfiles Protein kinase domain profile. 885 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02127 1035 SMART serkin_6 328 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02127 1035 FunFam Cysteine-rich receptor-like protein kinase 10 141 244 - -
Seca8g02127 1035 Gene3D - 142 244 IPR038408 -
Seca8g02127 1035 Gene3D - 665 770 IPR038408 -
Seca8g02127 1035 Gene3D - 780 874 IPR038408 -
Seca8g02127 1035 Gene3D - 31 132 IPR038408 -
Seca8g02127 1035 FunFam Os07g0541700 protein 961 1035 - -
Seca8g02127 1035 ProSiteProfiles Gnk2-homologous domain profile. 666 770 IPR002902 -
Seca8g02127 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1006 1018 IPR008271 GO:0004672|GO:0006468
Seca8g02127 1035 ProSiteProfiles Gnk2-homologous domain profile. 138 244 IPR002902 -
Seca8g02127 1035 FunFam Liguleless narrow1 404 607 - -
Seca8g02127 1035 FunFam Cysteine-rich receptor-like protein kinase 10 859 960 - -
Seca8g02127 1035 Gene3D Transferase(Phosphotransferase) domain 1 404 608 - -
Seca8g02127 1035 Gene3D Transferase(Phosphotransferase) domain 1 961 1035 - -
Seca8g02127 1035 Pfam Protein kinase domain 886 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02127 1035 CDD STKc_IRAK 334 601 - -
Seca8g02127 1035 Gene3D Phosphorylase Kinase; domain 1 875 960 - -
Seca8g02127 1035 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 638 - -
Seca8g02127 1035 ProSiteProfiles Protein kinase domain profile. 328 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02127 1035 SUPERFAMILY Protein kinase-like (PK-like) 869 1033 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02127 Seca-Chr8 46451351 46459739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02127 647 873 Receptor kinase-like Gene Family AT4G05200 34.894 7.45e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca8g02127 PK_Tyr_Ser-Thr 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02127 - - pcin:129293128 1142.87