Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02121 ATGAGCAAACCAAGAACCCATAGAAACCCCACAACCACTAATAAGCATGAGAACAAAAACCAAAGCCAAAGTCAGCCCCAGGAGAAAGACAAACAACCCTCATGGGCAATGTTAAGAGGCCTATTCACTTGTAAAATTGTCCAAGTGCAACAGCAGCAGAAGAAGCCACAGCCTGAAAAGAAACAACATTCAAGGCAGAACAAAGAGCAGAAAAAAGCTCAACAAGAGAAAAGAGATCCTAAAGAAAACATCAAGAAATGCAAGAAAATGAATTGTTCAGGTTCTTTTTGTAACAACACAAAGGTCATGACAAGGCCTAAAACAGGAATCCCTGATGTGCACAAGAAAAGGGTCTCACTCTCACATAATGGTGCATCTAACTACAACAATGATGCTTCCACTAGATCCATGCAACCTCCTCAACAAGAAATCAATGGACTTGTCTCTGCCTCTTCCTCTTCTTCTTCATTGTCAGCATATTCTAATTCCTCTCTCAGGGGTTATTTTAAGGGAATGCCATTCAGAAGACTCCCTGATTGCTATGAATGTCGAATGGTGGTTGACCCTGTTCTTGGTTTCACCAAAGACCCTTCTCTGAGGGGTACCATTTGTTCTTGCCCTCAATGTGGTGAAATCTTCATGAAAGCTGAAAACTTGGAACACCATCAAGCTATTAAGCATGCAGTTTCTGAACTGGGTCAAGAGGATTCAAGCAGGAACATAGTAGAGATTATATTTCACTCTAGCTGGCTAAAGAAAAATTCTCCAATGTGCAAAATTGACCGCATCCTTAAGGTCCACAATAGCCAGAGGACAATTTGCAAATTTGAAGAATACAGAGACTACATCAAAGCCAAACCCGCAAAGCTCACAAAGAAACACCCTCGTTGCATAGCAGATGGAAACGAGCTACTTAGGTTCCACTGCACCACCTTTGTGTGCCCGCTAGGACTTGGTGGCTCCTCCAACCTCTGCAATTCAACACCACAATGCAATGTCTGCGACATAATCAAGAGCGGTTTCAAGGCCACAAGGGAATCCAATGGTGGAAAGGGGATATTGACAACGGCAACAAGTGGGAGAGCACATGACAAAGCAGGGGTTGAGAGTAACGACAAGAGGGCAATGTTGGTTTGTAGGGTGATAGCAGGGAGGGTGAAGAAGAATAATAATAGTGCAGAAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCAGCATCGTGGAGGAGTATGATTCTGTTTCCGGTGATGTTGTTGGGGTTTATTCAAATTTGGATGAGTTGTATGTTTTCAACCATAGAGCTATTTTGCCTTGCTTTGTTGTAATCTATACCCTGTAG 1338 0.4335 MSKPRTHRNPTTTNKHENKNQSQSQPQEKDKQPSWAMLRGLFTCKIVQVQQQQKKPQPEKKQHSRQNKEQKKAQQEKRDPKENIKKCKKMNCSGSFCNNTKVMTRPKTGIPDVHKKRVSLSHNGASNYNNDASTRSMQPPQQEINGLVSASSSSSSLSAYSNSSLRGYFKGMPFRRLPDCYECRMVVDPVLGFTKDPSLRGTICSCPQCGEIFMKAENLEHHQAIKHAVSELGQEDSSRNIVEIIFHSSWLKKNSPMCKIDRILKVHNSQRTICKFEEYRDYIKAKPAKLTKKHPRCIADGNELLRFHCTTFVCPLGLGGSSNLCNSTPQCNVCDIIKSGFKATRESNGGKGILTTATSGRAHDKAGVESNDKRAMLVCRVIAGRVKKNNNSAEGGGGGGGGGGSIVEEYDSVSGDVVGVYSNLDELYVFNHRAILPCFVVIYTL. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02121 445 MobiDBLite consensus disorder prediction 1 85 - -
Seca8g02121 445 ProSitePatterns Zinc finger C2H2 type domain signature. 204 227 IPR013087 -
Seca8g02121 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 232 IPR013087 -
Seca8g02121 445 MobiDBLite consensus disorder prediction 56 85 - -
Seca8g02121 445 MobiDBLite consensus disorder prediction 15 31 - -
Seca8g02121 445 SUPERFAMILY ADP-ribosylation 229 444 - -
Seca8g02121 445 Gene3D - 227 444 - -
Seca8g02121 445 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 85 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02121 Seca-Chr8 46262586 46264202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02121 169 443 C2H2 Transcription Factor Family AT1G75710 53.265 4.03e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g02121 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02121 - - cave:132168016 542.732