LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g02120	ATGGATGGGAAACCTAACCATTTGCTCTCACCCACCTCTTCTTCCTCATCTCTCGATTTTCTCCGCCAAGTCAATGCAGCCCTTGAACGCCACCGCGCTCTCGGTACGACGCAATCAGATAGCATTAGGCCAAAGCGCTCCGCGGTTGCTCAACGGAATGTGGTGAACAAGTGTGAAGAGTTTCCATCGAGTCAGGGTCAGTCAGGGAATGACTCGCTTGCGCTTGGAAAGACCACCGCCTCTGTTGTTGGGGATGAAATGGAGTGGTTGGCAAGCAGCCAACTTGAAGCATCAATTGGATTCAATCAGGACTTGAAGCAACAAAATATTCAGCATGCAGAATCTGAAATAAGTTTGATATCTGAGGGAGGAAAAAGTTGTCTGTTGCCAAAGAGAACAATAGTTACTCAGGATCCTCTGCAGCAATTCCAAAAATTTTTAAGTCAACCAGCTACACAATCCTCAGTAGTGGGACCCTCATGTGTGACAGCTACATCAATCCATTCAACTTCAGCTCCAATGCTGAATACTTTAACTCGTTATTCCCATTCCCATGTGGATAGTGTCTCACATGTGGCTGCAGAACCTTGTGGGAACATTAATGTTAATCCTCATCCAATAACTCAAGAGTTTATTAAAGCACCGAATAATTCCCTAAAAGATACCAACAGAATATCAATTGGTCAGGTAGCAAGTGCAGTCCAAGCTTCCAATTCACTTATTGATGCAGAACTGCCACTTAAGAAGAGCGACCCATCTAAGGAGCAGCAAGGATGCATGTTAAAGGAAACTAGCATTTCAAAATATACTTCTTGTCATGATGACATGTTAACCAAGCAGAAAGACTCTGCAGTCGTTACCAACATACAGCCTCAGGCTCCGTCTTCATCTTCAGATGCAAAGTCAGAATCTTCTAAGTTAGAAAAACCAGAGAAAGCTGCAAGTTGTAAAGGATCATCAGGCACTCGGAAAAGAACCTATGACCCTGATTTGTTTTTTAAAGTCAATGGAAAGCTTTATCAAAGGCTTGGAAAGATAGGCAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCAGACTGTATGATCTATGCACTTAAAAAGATAAAGCTAAAAGGCCGTGATTATGCCACTGCATATGGATTTTGTCAAGAGATTGAGTATCTTAACAGGCTGAAAGGAAAGAGTAATATTATACAACTTATAGATTATGAGGTTACTGACAAGACTTTGCTTGAGGGAGTCACGAATGGGTCCTTCAATAATAAGGATGGTCGAGTTAAGGATGATGCATATATATACATGGTACTTGAATATGGTGAAATTGATTTGGCTCATATGTTATCTCAGAAATGGAAGCAACTGGATGGATGCAACCAGACCATAGATGAGAACTGGCATCGATTTTATTGGCAGCAAATTCTCCAAGCTGTCAACACAATTCATGAGGAACGTATTGTGCATTCTGACTTGAAGCCAGCTAACTTTCTCCTTGTCAAAGGTTCCCTAAAACTGATTGATTTTGGTATAGCCAAAGCAATAATGAGCGATACAACAAACATCCAACGGGATTCACAGGTTGGTACTCTAAATTATATGTCACCAGAGGCATTTATGTGCAATGAGAGTGATGCAAATGGAAACATCATAAAGTGTGGTCGACCATCAGATATCTGGTCCTTAGGCTGCATCCTTTATCAAATGGTATATGGAAGAACACCGTTTTCAGATTACAAGACATTTTGGGCCAAAGTCAAAGTTATAACTGATCCAAATCATCAAATTACATATGAACCAGTTTCAAACCCATTGCTTCTGGATCTTATGAAAAGGTGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAACTACTCCAACATCCTTTTCTTGCTCCTCCAGTTCCATGTCATTCATCTTTGTACCAAAACCAAGACTTTAAATTGCTGCAAATTATTGCTGAAACTTGTTCACTGGACCCAGAAGCATTGCAGCTATGTTGTCAGCTCCAACAGCTGCTTGGAAATCCCTTCAAGTTAGTAACACCTCACTCATTAAATTCGCGAGACCAACAGCATAAGCTGCTGTCCCGAATATCAGAACTTTGTGTTCAGCTGCAGGAACGATTGACAAATACTGATAAAGAACAATAA	2160	0.412	MDGKPNHLLSPTSSSSSLDFLRQVNAALERHRALGTTQSDSIRPKRSAVAQRNVVNKCEEFPSSQGQSGNDSLALGKTTASVVGDEMEWLASSQLEASIGFNQDLKQQNIQHAESEISLISEGGKSCLLPKRTIVTQDPLQQFQKFLSQPATQSSVVGPSCVTATSIHSTSAPMLNTLTRYSHSHVDSVSHVAAEPCGNINVNPHPITQEFIKAPNNSLKDTNRISIGQVASAVQASNSLIDAELPLKKSDPSKEQQGCMLKETSISKYTSCHDDMLTKQKDSAVVTNIQPQAPSSSSDAKSESSKLEKPEKAASCKGSSGTRKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCMIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKSNIIQLIDYEVTDKTLLEGVTNGSFNNKDGRVKDDAYIYMVLEYGEIDLAHMLSQKWKQLDGCNQTIDENWHRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLNYMSPEAFMCNESDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKVKVITDPNHQITYEPVSNPLLLDLMKRCLAWDRNERWRIPQLLQHPFLAPPVPCHSSLYQNQDFKLLQIIAETCSLDPEALQLCCQLQQLLGNPFKLVTPHSLNSRDQQHKLLSRISELCVQLQERLTNTDKEQ.	720

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca8g02120	719	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	487	499	IPR008271	GO:0004672\|GO:0006468
Seca8g02120	719	Gene3D	Phosphorylase Kinase; domain 1	333	418	-	-
Seca8g02120	719	ProSitePatterns	Protein kinases ATP-binding region signature.	346	368	IPR017441	GO:0005524
Seca8g02120	719	SUPERFAMILY	Protein kinase-like (PK-like)	334	641	IPR011009	-
Seca8g02120	719	CDD	PKc_Mps1	338	633	IPR027084	-
Seca8g02120	719	Gene3D	Transferase(Phosphotransferase) domain 1	454	636	-	-
Seca8g02120	719	Coils	Coil	705	719	-	-
Seca8g02120	719	SMART	serkin_6	340	633	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca8g02120	719	Pfam	Protein kinase domain	340	633	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca8g02120	719	FunFam	serine/threonine-protein kinase mph1 isoform X2	333	420	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g02120	Seca-Chr8	46183706	46190672	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g02120	346	633	MAP Kinase Kinase Kinase	AT4G08470	29.452	2.56e-23	102

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Seca8g02120		Pkinase	3.4e-55	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g02120	K08866		-	gmx:100816674	1092.41

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