Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02096 ATGATCCGAAGGAAACAACCGAAGCTGGAACGCCGCAATGCCGCGAAGCACTTCGACTACGATGCTGAAGCTTCGTCGCCATCGTCGTCGCTTGACTACTCCGGCACGACCTCGCTTCTCTACACCCGATCCATGGATTTCTACGATAAAACCAGCTTCCGAATCGATGGAAACGAGGGCGAGTTAGATGTTATTTGCAAGAGCCTCGGACTCTCCGGGCCGGAGGATTTCTCCATCCCGGCAGAGGCGTGGGAGGCCATGAAGTTCCGGTCTTCGTCGGATATTCTGCCAAGACTGGACCTCGTTGATTTCGATGAAGCGAAGGAAAACGACGAAATCGGAGTAGTAGAGTGCGAAGATAGGGTTCCGATTAGGGGTTTTGATGAGTGTGCTCCAGCTGAGAGCAGCGGATGCTGCACCGGCGGAGGCGGCGACGAAGATAGGGTTACGATTAGGTGTTGTGATGAGACTAGCGGTTGTTGCACCGGCGGAGAAGATAGGGTTCCGATTAGGGGTTTAGATGAGTGCGCTCCAGCCGAGACTAGTGGCGGCGGCGGCGGCGAAGATAGGGTTTCGACTAGGGATTTCGATGAGCGTGCTCCTGCAGAGACCAGAAGTAGCTGCTCCGGCGGCGGCGGTATCAAGGGATTTCGGCCTGCGATGCTTAAGCCGCCGCCGGGGATTAGGGTTTCGGTTGTCGACGACACGTGCTCCACGTGGGATCTTATGAGGGATTTCGCTCCGCCAGGGGAAGGAGGAGGAAAGGAAAGTTATGTGGAGTTGAGTTCTTCCGATGATGACCGAGAAGAGAAGGAAGAGGAACAGGAACATGAAGAAGAAAGAGGGGAAGTTGGTAGAGTGAGATTGAAGAGAGAAGCGGAGGAAAATACGGAGATTGTTGGTGATTTTTCGAGGTCGTGTTCGTTTACTACGTCAAATGAAGATGATTCCTCTAGCACCACCACGGATCCTAGGTCCAATAGTATATCTCCTAACGTGAGAGTCAAGCGTGTTATTACCCCCGGCAGCTGGCAAAAGGGTGGGCGTTTGGGGAGTGGTTCGTTTGGCACTGTCTATGAAGGAATTTCTGAAGATGGATTCTTCTTTGCTGTAAAAGAAGTTTCACTGCTTGATCAAGGGAGTCAGGGAAAGCAAAGTGTACATCAACTGAAGCAGGAGATTGAACTTTTGAGTCAGTTTGAACATGAGAATATAGTTCAATACTTTGGCACTGAAATGGATGAATCAAATCTGTATATCTTTCTTGAGCTTGTAACCAGAGGATCCCTTTTAAGCCTCTACCAGAGGTATACTCTTCGAGATTCCCAAGTTTCTGCCTATACAAGACAGATTCTGCATGGTTTAAAGTATCTACATGATCGAGATATTATTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCAAATGGATCCGTCAAGCTCACAGATTTTGGATTGGCAAAGGCAATCAAATTGAATGATGTTAAATCATGCAAGGGAACAGCGTTCTGGATGGCCCCAGAGGTAGTAAAAGGAAAAAATAAAGGTTATGGGCTTCCGGCTGATATATGGAGTCTGGGATGCACTGTGTTGGAGATGTTAACGGGCAAAATTCCATACCATCCTTTGGAATGGATGACGGCATTGCTTAGAGTTGGAAAAGGTCAGCCACCACCTGTGCCTGATTTCCTTTCAAGAGATGCGCGCGATTTTATACTGCAGTGTCTTAAAGTTAATCCAGATGATCGTCCCACTGCTGCTCAACTCATAAACCATAAATTTGTCCAAAGGTCACTTTCTCAGTCCTCTGGCTCTGCATCTCCTTATCCCAGAAGAGGTTAA 1848 0.4838 MIRRKQPKLERRNAAKHFDYDAEASSPSSSLDYSGTTSLLYTRSMDFYDKTSFRIDGNEGELDVICKSLGLSGPEDFSIPAEAWEAMKFRSSSDILPRLDLVDFDEAKENDEIGVVECEDRVPIRGFDECAPAESSGCCTGGGGDEDRVTIRCCDETSGCCTGGEDRVPIRGLDECAPAETSGGGGGEDRVSTRDFDERAPAETRSSCSGGGGIKGFRPAMLKPPPGIRVSVVDDTCSTWDLMRDFAPPGEGGGKESYVELSSSDDDREEKEEEQEHEEERGEVGRVRLKREAEENTEIVGDFSRSCSFTTSNEDDSSSTTTDPRSNSISPNVRVKRVITPGSWQKGGRLGSGSFGTVYEGISEDGFFFAVKEVSLLDQGSQGKQSVHQLKQEIELLSQFEHENIVQYFGTEMDESNLYIFLELVTRGSLLSLYQRYTLRDSQVSAYTRQILHGLKYLHDRDIIHRDIKCANILVDANGSVKLTDFGLAKAIKLNDVKSCKGTAFWMAPEVVKGKNKGYGLPADIWSLGCTVLEMLTGKIPYHPLEWMTALLRVGKGQPPPVPDFLSRDARDFILQCLKVNPDDRPTAAQLINHKFVQRSLSQSSGSASPYPRRG. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02096 615 MobiDBLite consensus disorder prediction 301 331 - -
Seca8g02096 615 MobiDBLite consensus disorder prediction 243 331 - -
Seca8g02096 615 SUPERFAMILY Protein kinase-like (PK-like) 322 602 IPR011009 -
Seca8g02096 615 MobiDBLite consensus disorder prediction 1 33 - -
Seca8g02096 615 SMART serkin_6 344 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02096 615 MobiDBLite consensus disorder prediction 278 299 - -
Seca8g02096 615 MobiDBLite consensus disorder prediction 176 222 - -
Seca8g02096 615 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 230 609 - -
Seca8g02096 615 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Seca8g02096 615 Pfam Protein kinase domain 345 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02096 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Seca8g02096 615 Gene3D Transferase(Phosphotransferase) domain 1 343 610 - -
Seca8g02096 615 Coils Coil 261 281 - -
Seca8g02096 615 FunFam Mitogen-activated protein kinase 1, putative, expressed 342 609 - -
Seca8g02096 615 ProSiteProfiles Protein kinase domain profile. 344 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02096 Seca-Chr8 45497891 45504926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02096 8 601 MAP Kinase Kinase Kinase AT4G08500 50.974 2.22e-168 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca8g02096 Pkinase 1.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02096 K13414 - gmx:100804388 709.909