Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02092 ATGTATGGAGACATTGAAGATTTTCTAGAAGGAAACACCCTCATGCCAATAAGGTATTCATTCAAAGAGATAAAGAAGATGACTAGGAATTTTGAGTACAAATTAGGTGAAGGAGGTTATGGCTCTGTTTATAAAGGAAAGCTACGCAGTGGACCTTTTGTAGCCATAAAGATGTTGGGTAAAGCTAAGGCTAATGGACAAGAATTCATCAGTGAAGTTGCAACAATAGGAAGAATACACCATGCTAATGTGGTGCGACTTATTGGATTTTGTGCTGAGGGGTCAAAACGTGCTCTGGTTTATGAATTCATGCTCAATGGTTCTTTGGATAGATATATTCTGTCCAAAAATGATAGTACACCTTTAACTTATGAGCAAATGTATGAGATATCCCTTGGAGTGGCTCGTGGTATTGCTTATCTGCATCAAGGTTGTGACATGCAAATTTTGCATTTTGACATCAAGCCCCATAACATCCTTCTTGATGACAACTTTAATCCTAAGGTTTCAGACTTTGGTCTTGCAAAGCTTTATCCTATTGACAATAGCATTGTCACGTTGACTGCAGCAAGAGGAACAATTGGTTACATGGCTCCAGAATTGTTCTACAAAAATATTGGGGGAATTTCCTATAAGGCTGATGTCTACAGCTTTGGTATGCTTTTGATGGAAATGGCAAGCAGGAGAAGAAACCTGAATCCTCATGCAGATCATTCAAGCCAACTTTTCTTTCCCTTTTGGATTTACAATCAATTGAATGAAGAAAAGGAGATAGAAATGGAAGAAGTTACAAATGAAGTAGGAAAGAATAGTGTGAAGAAAATGCCCATGGTTGCACTATGGTGTATACAATTGAAACCATCTGATCGTCCTTCAATGAACAAAGTTATTTAG 894 0.377 MYGDIEDFLEGNTLMPIRYSFKEIKKMTRNFEYKLGEGGYGSVYKGKLRSGPFVAIKMLGKAKANGQEFISEVATIGRIHHANVVRLIGFCAEGSKRALVYEFMLNGSLDRYILSKNDSTPLTYEQMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDNFNPKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYKNIGGISYKADVYSFGMLLMEMASRRRNLNPHADHSSQLFFPFWIYNQLNEEKEIEMEEVTNEVGKNSVKKMPMVALWCIQLKPSDRPSMNKVI. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02092 297 FunFam serine/threonine-protein kinase PBS1-like 4 103 - -
Seca8g02092 297 FunFam PR5-like receptor kinase 104 297 - -
Seca8g02092 297 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 297 IPR045874 GO:0004672
Seca8g02092 297 Pfam Protein kinase domain 32 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02092 297 SMART serkin_6 29 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02092 297 Gene3D Transferase(Phosphotransferase) domain 1 104 297 - -
Seca8g02092 297 ProSiteProfiles Protein kinase domain profile. 29 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02092 297 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Seca8g02092 297 ProSitePatterns Protein kinases ATP-binding region signature. 35 57 IPR017441 GO:0005524
Seca8g02092 297 SUPERFAMILY Protein kinase-like (PK-like) 15 296 IPR011009 -
Seca8g02092 297 Gene3D Phosphorylase Kinase; domain 1 7 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02092 Seca-Chr8 45331481 45332374 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02092 14 297 Receptor kinase-like Gene Family AT4G18250 49.828 9.89e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g02092 Pkinase 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02092 - - tpra:123893228 494.197