Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02076 ATGAGCTCTTCATCTACTCAACTAGTCATCACAAAAAGGATGGACATATATGAGCCATTCCATCAAGTGAGCAGCATGTGGGGGGACAGCTTTAAAGTTGATGGCAGCCTGAATTCAATTGCTTCCCCAATGTTAATGAAGAACACTAACATGGAGAACAAGTCTGAATGTACCCCTCATGAATCAAGGGAACCTTCTGGAGATGATCAAGAGAATACTGGCAAATCTGTTAGCAAGGTGCTAAGACGTCTAGCCCAAAATCGTGAGGCTGCTCGGAAATGTAGGCTAAGAAAGAAGGCTTATGTTCAACAATTGGAAACAAGCCGTTTGAAGCTTATGCAGTTGGAGCTGGAGATTGAGAAATCAAGAAAACAGGTAATCCCAAATGTCAACTTGCAGGGTTTATACATAGGCAAGGCATTAGATGTCAGTTATATGGGATCATCTGGAACAATAAACCCAGGGTTGTCTGTGTTTGAAATTGAATATGCACGTTGGGTTGAAGAGCAGGATAGACAGAATGGGGAACTAAGAAATGCATTGCAAACAAATGCATCTGATATACAGCTTCATCTACTTGTTGAGAATAGCTTGAACCACTACTCAAATCTTTTCAGGATGAAAGCAGATGCTGCAAAAGCTGATGTCTTTTATTTGATCTCTGGTGTGTGGAAAGCATCAGTAGAACGCCTTTTTCTTTGGATTGGAGGATCCCGCCCTTCACAGCTTCTTAATATCATTGTACCACAGCTTCAGTCTTTGACTGATCCACAAATTGCCAGCATTAACAACCTCCGTCAATCATCTCAGCAAGCTGAAGATGCTCTTTCACTTGGTTTGGAGAAACTCCAGCAGAGTTTGGTCCACAACATACAAGCTGATCCATTGGTTGTAGGAAACTATGGGCTTCAGATGGCTGCTGCCATAGACAAAGGTGAAGCACTAGAAGGTTTTGTAAACCAGGCAGATCACCTTAGGCAACAAACTCTGCTATACATGTCTCGCATCCTGACAATTGGGCAAGCTGCTCAAGGTTTGCTGGCTATGGGGCAATATTTTCACCGTCTTCGCACTCTTAGTTCTTTATGGACTGCTCGTCCATGTGATCCTGCTTACACTACTCAACACTCAAATTGA 1137 0.4274 MSSSSTQLVITKRMDIYEPFHQVSSMWGDSFKVDGSLNSIASPMLMKNTNMENKSECTPHESREPSGDDQENTGKSVSKVLRRLAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEIEKSRKQVIPNVNLQGLYIGKALDVSYMGSSGTINPGLSVFEIEYARWVEEQDRQNGELRNALQTNASDIQLHLLVENSLNHYSNLFRMKADAAKADVFYLISGVWKASVERLFLWIGGSRPSQLLNIIVPQLQSLTDPQIASINNLRQSSQQAEDALSLGLEKLQQSLVHNIQADPLVVGNYGLQMAAAIDKGEALEGFVNQADHLRQQTLLYMSRILTIGQAAQGLLAMGQYFHRLRTLSSLWTARPCDPAYTTQHSN. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02076 378 Pfam bZIP transcription factor 79 112 IPR004827 GO:0003700|GO:0006355
Seca8g02076 378 Gene3D - 78 132 - -
Seca8g02076 378 MobiDBLite consensus disorder prediction 52 76 - -
Seca8g02076 378 Coils Coil 98 125 - -
Seca8g02076 378 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Seca8g02076 378 SUPERFAMILY Leucine zipper domain 79 113 IPR046347 GO:0003700|GO:0006355
Seca8g02076 378 FunFam BZIP family transcription factor 78 127 - -
Seca8g02076 378 MobiDBLite consensus disorder prediction 54 70 - -
Seca8g02076 378 PANTHER TRANSCRIPTION FACTOR TGA9 2 368 - -
Seca8g02076 378 ProSiteProfiles DOG1 domain profile. 156 366 IPR025422 GO:0006351|GO:0043565
Seca8g02076 378 SMART brlzneu 75 135 IPR004827 GO:0003700|GO:0006355
Seca8g02076 378 Pfam Seed dormancy control 175 248 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02076 Seca-Chr8 44889864 44895355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02076 2 370 Calmodulin-binding Proteins AT1G77920 54.308 6.06e-135 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca8g02076 DOG1 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02076 K14431 - gmx:100526976 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02076 8 44889864 44895355 Seca8g02076 8 44889864 44895355 ECH
Seca8g02076 8 44889864 44895355 Seca8g02076 8 44889864 44895355 PCT