Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02053 ATGGGTCGTGTTAAACTTGAGATAAAAAGAATAGAGAACGTTACAAATCGACAAGTTACATTCTCAAAGCGCAGAAATGGCCTTATCAAGAAAGCCTATGAGTTGTCCATCCTTTGTGACATTGATATTGCACTTGTAATGTTTTCTCCTTCGGGACGTCTTAGTCACTTTTCTGGAAGAAGGAGGATTGAAGATGTTTTCACTCGTTATATTAATCTTCCTGATCAAGAAAGAGATAACGCTGTAAGTTTTCCTGAGCTACCTTATCGCAGGGGTATTCAGAATAAGGAGTATTTGCTTAGGACGCTTCAACAACTTAGGAGTGAAAATGACATAGCTCTTCAGCTGGCCAATCCGGGAGACATTAACTCCGAGATTGAGGAACTTCAACAAGAAGTTAGTAGGTTACAACAACAACTTCAAATGGCCGAGGAGCAGATAAGGATATATGAACCTGACCCATTAAAGATGACATCTATAGGGGAGCTTGAAACCAACGAAAAGAACCTAATGGACACCTTGACACGTGTCATGCAAAGAAAGGAATATTTGCTAAGCAACCACCTATCTTCGTATGATCCATCTGGAATTCAGGGGATGCCTACCTCATTCGAGAATGTAGGTTGGTTGCAGGACGGTAGTCAGAACCATCCCCAGATTTTTGATGCATCCACACCATTGGATACTCTCAGGGATTTGTCCTCCACTGTGTATGGTTCATTTTCACAAGGGACAAGTTCAAATGCTGATCCACGAGGCATAGGGGAGTGCCACGTGGCAAATCCAAGCGATGGGAACCTTCAAACATGGCCTCAAGGATACACATTATATCCTCATATTCAACATGACATGGTGGGACCTGACATGCAAGATATGATGCCACATGGGCAGGTGAATATCCCAATCACTGCCTCACACGTGGAACCTCCCAAGAGTGAACCTGCACCAGAATATGATCAGTGTAAACAACCTCATCCTCATCAGCTTAATGGTCAATGA 999 0.4294 MGRVKLEIKRIENVTNRQVTFSKRRNGLIKKAYELSILCDIDIALVMFSPSGRLSHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVSRLQQQLQMAEEQIRIYEPDPLKMTSIGELETNEKNLMDTLTRVMQRKEYLLSNHLSSYDPSGIQGMPTSFENVGWLQDGSQNHPQIFDASTPLDTLRDLSSTVYGSFSQGTSSNADPRGIGECHVANPSDGNLQTWPQGYTLYPHIQHDMVGPDMQDMMPHGQVNIPITASHVEPPKSEPAPEYDQCKQPHPHQLNGQ. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02053 332 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca8g02053 332 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Seca8g02053 332 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Seca8g02053 332 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca8g02053 332 FunFam MADS-box transcription factor 41 13 93 - -
Seca8g02053 332 MobiDBLite consensus disorder prediction 305 332 - -
Seca8g02053 332 Coils Coil 126 146 - -
Seca8g02053 332 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Seca8g02053 332 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca8g02053 332 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca8g02053 332 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca8g02053 332 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca8g02053 332 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca8g02053 332 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02053 Seca-Chr8 43945222 43949407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02053 1 304 Type I MADS-box Gene Family AT1G22130 58.917 3.14e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca8g02053 SRF-TF 4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02053 - - pvu:PHAVU_008G170400g 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02053 8 43945222 43949407 Seca8g02053 8 43945222 43949407 ECH