Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02048 ATGTCCTCAATGGGTCACCAAGATGATGAAAATATTGAAACAAAAGAGATGGATGGGAGAAGTTTGTCATCTTCACAAGACCAAGAACCATACGTCCACAAGGTTGGAATTCCTCCAAGACAAAACCTCTTCAAGGAATTCCAATCCACTGTGAAAGAAACATTCTTTGCAGATGATCCTCTACGGTCCTTTAAGGATCAGTCTAAATCCCGGAAGTTCATCTTGGGCATTGAAGCCATATTCCCCATAGTTAGTTGGGGGAGAAATTATAGCCTCAAAAAATTTAGAGGGGATCTTATTTCTGGTCTAACTATAGCAAGTCTCTGCATTCCTCAGGACATTGGATATGCAAAGCTTGCAAATTTAGCTCCACAGTATGGACTGTACTCCAGCTTTGTTCCACCACTGATTTATTCTGTCATGGGTAGTTCTCGTGACATTGCAATAGGACCAGTGGCAGTGGTTTCACTCTTGTTGGGGACTTTACTTCAGAATGAGATTGATCCCAATGAAAATCCAGAAGACTATCGAAGACTTGCTTTTACTGCCACTTTTTTTGCTGGGATTACTCAAGCAACACTTGGGGTTTTTAGGTTAGGATTCTTGATTGATTTCTTATCTCATGCTGCAATTGTTGGTTTTATGGGGGGAGCTGCCATCACAATTGCCCTTCAACAGCTTAAAGGATTCCTTGGGATAGCAAAGTTCACAAAGAAAACTGATATTATCTCTGTGATGGATTCAGTATTCTCATCAGCCCATCATGGATGGAACTGGCAAACTATAGTAATTGGAGCTACCTTTCTGGCTTTTCTTCTGTTTGCTAAGTATATTGGAAAGAAGAGCCAGAAATTCTTCTGGGTACCAGCAATTGCCCCATTGATATCTGTTGTACTCTCCACATTTTTTGTATGCATAACCCGTGCAGACAAGCATGGTGTTGCAATTGTAAAACATATAGAGAAAGGGATCAATCCTTCATCTGTGAAGGAAATTTATTTTAGTGGTGATTACCTTGGGAGAGGTGTCAGAATTGGCATTGTGGCTGGCATGATAGCATTGACAGAAGCAATAGCAATTGGAAGAACTTTTGCTTCTATGAAGGACTATCAACTTGATGGAAACAAAGAAATGATGGCATTAGGAGCTATGAATGTTGTTGGTTCAATGACTTCCTGTTATGTTGCAACTGGTTCTTTCTCTCGGTCAGCAGTAAATTTCATGGCTGGCTGTGAAACTCTAGTCTCTAATATTATCATGTCATTTATTGTGTTCTTAACCCTGCAATTCATCACACCTCTTTTCAAATACACTCCAAATGCCATCCTTTCTTCAATCATCATTTCTGCTGTCATCAACCTTGTGGACTACAAGGCAGCAATTTTGATATGGAAGATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTTGGTGTTGTTTTTGCCTCAGTCGAGATAGGACTCTTAATAGCTGTCTCTATATCCTTTGCAAAGATCCTATTACAAGTCACAAGGCCTCGAACTGCTATTCTGGGGAAAATCCCTAGGACAACTGTCTATAGAAACATTCAACAATACCCAGAGGCCATGAGGGTTCCTGGTGTATTGATTATAAGAGTTGATTCTGCAATATATTTTTCCAACTCCAATTATGTTAAAGAAAGGATATTAAGATGGCTGATGGATGAGGAAGAACGAGTGAAAGTCGACTACCAAACAAGAATCCAATTTTTAATAGTTGAGATGTCACCCGTTACTGACATCGATACCAGTGGCATCCATGCCCTTGAAGAGTTAAATAGAAGTCTTCAAAAGAGAGATGTTAAGCTTGTTCTGGCAAATCCAGGCCCAGTAGTGATAGACAAACTCCACACATCTAACTTTGCTAACTTGCTTGGTGTGGACAAGATCTTCCTTACAGTTGCAGAAGCTGTTGCATACTGTTCTCCAAAGCTGGCTGAGGACCCTTGA 1977 0.4016 MSSMGHQDDENIETKEMDGRSLSSSQDQEPYVHKVGIPPRQNLFKEFQSTVKETFFADDPLRSFKDQSKSRKFILGIEAIFPIVSWGRNYSLKKFRGDLISGLTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLIYSVMGSSRDIAIGPVAVVSLLLGTLLQNEIDPNENPEDYRRLAFTATFFAGITQATLGVFRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIAKFTKKTDIISVMDSVFSSAHHGWNWQTIVIGATFLAFLLFAKYIGKKSQKFFWVPAIAPLISVVLSTFFVCITRADKHGVAIVKHIEKGINPSSVKEIYFSGDYLGRGVRIGIVAGMIALTEAIAIGRTFASMKDYQLDGNKEMMALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETLVSNIIMSFIVFLTLQFITPLFKYTPNAILSSIIISAVINLVDYKAAILIWKIDKFDFVACMGAFFGVVFASVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEAMRVPGVLIIRVDSAIYFSNSNYVKERILRWLMDEEERVKVDYQTRIQFLIVEMSPVTDIDTSGIHALEELNRSLQKRDVKLVLANPGPVVIDKLHTSNFANLLGVDKIFLTVAEAVAYCSPKLAEDP. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02048 658 Gene3D STAS domain 507 654 IPR036513 -
Seca8g02048 658 PANTHER SULFATE TRANSPORTER 41 651 IPR001902 GO:0016020|GO:0055085
Seca8g02048 658 NCBIfam sulfate permease 82 646 IPR001902 GO:0016020|GO:0055085
Seca8g02048 658 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Seca8g02048 658 MobiDBLite consensus disorder prediction 1 32 - -
Seca8g02048 658 Pfam Sulfate permease family 95 475 IPR011547 GO:0016020
Seca8g02048 658 MobiDBLite consensus disorder prediction 8 22 - -
Seca8g02048 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Seca8g02048 658 Pfam STAS domain 528 646 IPR002645 -
Seca8g02048 658 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
Seca8g02048 658 FunFam Sulfate transporter 31 507 653 - -
Seca8g02048 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02048 Seca-Chr8 43793627 43799258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02048 1 657 Inorganic Solute Cotransporters AT1G22150 76.560 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02048 K17470 - gmx:100797668 1158.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02048 8 43793627 43799258 Seca4g02764 4 47641877 47648791 PCT