Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02040 ATGATGGATAAAGCAGATTTGAATAATTCTGACTCGGGGAAATTAAAAAATTCTAAATCGAGTGATAAAGATAATGGTCGTAGTCAAAACTTACCAGAAGGTTACAAAAGGATTAATGAACTAGCAGTTGATGATATTAAGGGTCTTGAATTTGATTCGGAAGAGGATGCATATGATTTCTATTCTAAGTATGCAAAATTTAACGGATTCGCTGTTAGGAAAGATGATGTTTATCGGGATAGCAATAATTTGATTAGAATGAGGCAAATGGTGTGTAACAGGCAAGGGGAGAGAAGTGAAAAACATTTAAATAGGACTGATAGAATTAGGGAGGCAAAGGCTATTACACGTACTAAATGTCATGTAAGGATTAGGGTTCATTTAGATTATAAGACTAGGAAGTGGAGGGTAGGGTTGTTTGAGCCAAATCACAATCATGACCTGACTCTTGCCAATATGGTGCATTTGCTACCTGCATATCGTGGTTTGAGTGTTGGTGATAAAGCTCAGGTTGAAAGTCTTCACTTATATGGTGTTAGGACATGCCATATAATTGGGTGA 561 0.3654 MMDKADLNNSDSGKLKNSKSSDKDNGRSQNLPEGYKRINELAVDDIKGLEFDSEEDAYDFYSKYAKFNGFAVRKDDVYRDSNNLIRMRQMVCNRQGERSEKHLNRTDRIREAKAITRTKCHVRIRVHLDYKTRKWRVGLFEPNHNHDLTLANMVHLLPAYRGLSVGDKAQVESLHLYGVRTCHIIG. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02040 186 MobiDBLite consensus disorder prediction 1 33 - -
Seca8g02040 186 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 21 180 - -
Seca8g02040 186 Pfam FAR1 DNA-binding domain 59 149 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02040 Seca-Chr8 43607787 43608347 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g02040 FAR1 9.6e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02040 - - ccaj:109792835 189.504