Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02029 ATGGCAGCTACAATGGACTTCTACAACAGACAACAACAAGAGCTTCAGTCAGATCCCTTTAGAGGTGGTGAGTTAATGGAAGTTCTAGAAACTTTTATGAAAAGTCCTTCCACAACTCCCTCTCAATCCTTATCCCTTTCTTCAAATTCTCACCTACCTTCTGCTTCTTCTTCTCCTTCTTTCTTCCAACCCCTTCCTTCTTCTCTCCCTCCACAGCCCAATTTCTACACAGAAGGTTGCTCCTCAACGATGACCTACCTATTTCCCTCTGGGTTATCAGATAGCCAAAACTTCATAGGCTTTGAGCAGCAACCACAACCAAGTCATCATCATAATAATAATTCTTCTATTCTTGGCCTTAACCACCTAACCCCATCTCAGATGGCCCAGATCCAAGCCCAGATCCAGCTCCAGGCCCACCAGAACAACAACAACAACACCATGAGCTTCCTTGGGCCCAAGCCCATCCCCATGAAGCAAGTGGGTACCCCTCCAAAGCCCACCAAGCTTTACAGAGGGGTAAGGCAACGGCATTGGGGCAAATGGGTAGCTGAAATCAGACTCCCAAAGAACCGCACAAGGCTTTGGCTTGGAACCTTTGACACTGCTGAAGAAGCTGCTTTGGCTTATGACAGAGCAGCATACAGGCTCAGGGGTGACTTTGCTAGGCTTAATTTCCCAAACCTGAAACACCAAGGTTCATGTGTTGAAGGTGCTTTTGGTGAGTACAAGCCTCTGCATTCATCTGTTGATGCAAAGCTTGATGCTATTTGTGAGAATTTGGCTGATATGCAGAAACAAGGGAAGCCAGAGAAAAGTGTGAGGTCTTCTAAGAAGTTTGCTTCAAAACAAGGTTCAAAGGTGGTGGTGGCTACAACAACTCAACCACAGTTGGAGAAGAATACTTGTTGCAAGGTTGAACCTTCTTTGTCTCCTTTGGTGACTGAGAGTGAAGGCTCTGCTGATTCTTCTCCTCTGTCTGATCTTACCTTTGGGGATGTTATTGAGCCACAATGGGAAGCTGGTTCAGAGCATTTTAATCTGCAAAAGTTCCCATCTTATGAGATTGATTGGGATTCTCTGTGA 1086 0.4567 MAATMDFYNRQQQELQSDPFRGGELMEVLETFMKSPSTTPSQSLSLSSNSHLPSASSSPSFFQPLPSSLPPQPNFYTEGCSSTMTYLFPSGLSDSQNFIGFEQQPQPSHHHNNNSSILGLNHLTPSQMAQIQAQIQLQAHQNNNNNTMSFLGPKPIPMKQVGTPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDFARLNFPNLKHQGSCVEGAFGEYKPLHSSVDAKLDAICENLADMQKQGKPEKSVRSSKKFASKQGSKVVVATTTQPQLEKNTCCKVEPSLSPLVTESEGSADSSPLSDLTFGDVIEPQWEAGSEHFNLQKFPSYEIDWDSL. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02029 361 MobiDBLite consensus disorder prediction 97 118 - -
Seca8g02029 361 FunFam Ethylene-responsive transcription factor 2 169 228 - -
Seca8g02029 361 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 361 - -
Seca8g02029 361 MobiDBLite consensus disorder prediction 34 63 - -
Seca8g02029 361 Pfam AP2 domain 171 219 IPR001471 GO:0003700|GO:0006355
Seca8g02029 361 SUPERFAMILY DNA-binding domain 170 227 IPR016177 GO:0003677
Seca8g02029 361 Gene3D AP2/ERF domain 170 228 IPR036955 GO:0003700|GO:0006355
Seca8g02029 361 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g02029 361 PRINTS Ethylene responsive element binding protein signature 193 209 IPR001471 GO:0003700|GO:0006355
Seca8g02029 361 PRINTS Ethylene responsive element binding protein signature 171 182 IPR001471 GO:0003700|GO:0006355
Seca8g02029 361 ProSiteProfiles AP2/ERF domain profile. 170 227 IPR001471 GO:0003700|GO:0006355
Seca8g02029 361 SMART rav1_2 170 233 IPR001471 GO:0003700|GO:0006355
Seca8g02029 361 CDD AP2 169 229 IPR001471 GO:0003700|GO:0006355
Seca8g02029 361 MobiDBLite consensus disorder prediction 1 18 - -
Seca8g02029 361 MobiDBLite consensus disorder prediction 34 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02029 Seca-Chr8 43237197 43238282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02029 1 361 AP2-EREBP Transcription Factor Family AT1G78080 50.663 1.33e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g02029 AP2 8.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02029 K09286 - gmx:100781774 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02029 8 43237197 43238282 Seca4g02781 4 47953767 47954861 PCT