Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02025 ATGGCTGAAAATGGCCGTGCACCCTCCTTGTCCTTTGTATCAAAGAATAACTCTTTGAAAGGTCTCCCCACTCTCTCTGATAACTCCCCTATCAAGGGTGGTGCAAACGGAGGAAACGCGATCTCCCTTTCCAACAACAACAATGATGAAGAGTGCTACATCCTCCCTCGTGAAACCAAGGAGATGAAGGACATAACTACACCTTCCAACTACAAGGGACGAAGAGGGAGGCCACCTGGATCTAAGAACAAGCCTAAGCCCCCCATTATAATGAAGGAGGATAACAATCAATATCTCAAACCAATCGTTATTGAAATCCCTACTGGGAACGACGTTGTTAAGGCCATCATCGAGGTCGCTTATCGGCATCATGTCGGCATCACTGTGCTAAGTGGTTCAGGTTCTGTCTCCAACGTTACCCTTTGCAACCCTCAATCCCACACTGTTCGTACTTTCTCTATCAATGGATATTTCGAAATTATATCTCTTACAGGAACTTACATGAGTGGTCCTGTTCCCCCACTCTCTCCTTCCAATCGTGCCTTTTCCTCCTTTGCTATTCACCTCTCAGGGCCCCAGTGCCAGGTAATTGGTGGAGTTGTTGGAGGGAAGCTTGTGGCTGCAAGTCGTGTGGTTGTTGTGGCTTCAATGTTCAAGAAGCTTGAGTACCACAGGTTGCCCTTCATCAATGGAAGTGTTGAGGAAGTTGAAACGGATGACCCCACATATAATGGTGCTATTAATGTTGATGTAAGTGGTCCTCGTGATATCACCAACAACACTGCCATTGCTATTCCCAATGATATGTCTGCTTTCAGTGTTATGAATGAATAG 834 0.4592 MAENGRAPSLSFVSKNNSLKGLPTLSDNSPIKGGANGGNAISLSNNNNDEECYILPRETKEMKDITTPSNYKGRRGRPPGSKNKPKPPIIMKEDNNQYLKPIVIEIPTGNDVVKAIIEVAYRHHVGITVLSGSGSVSNVTLCNPQSHTVRTFSINGYFEIISLTGTYMSGPVPPLSPSNRAFSSFAIHLSGPQCQVIGGVVGGKLVAASRVVVVASMFKKLEYHRLPFINGSVEEVETDDPTYNGAINVDVSGPRDITNNTAIAIPNDMSAFSVMNE. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02025 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 238 IPR014476 GO:0003680
Seca8g02025 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 227 - -
Seca8g02025 277 ProSiteProfiles PPC domain profile profile. 96 239 IPR005175 -
Seca8g02025 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 219 IPR005175 -
Seca8g02025 277 CDD DUF296 100 205 IPR005175 -
Seca8g02025 277 MobiDBLite consensus disorder prediction 9 52 - -
Seca8g02025 277 MobiDBLite consensus disorder prediction 1 89 - -
Seca8g02025 277 Gene3D - 99 241 - -
Seca8g02025 277 MobiDBLite consensus disorder prediction 53 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02025 Seca-Chr8 43124229 43125062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02025 75 227 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 47.134 6.97e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02025 - - lang:109356348 172.94