Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02020 ATGACGAACCAGAATGTGGTTGGTGCTCCTATTGGGAAATCACATGTGAATACCACACTTGTGGAGTTAGCAATGTCGATTTCAAATTCTAATATTGTGTTACCAAGAACATCACTGCCTGAATTAATGGCTTTGCTTGGTGGGTTAACATTTTTGGGGCAACCCCAGAAGAAGCTATTGAAAGATGGTAGTGGTGGAAAAGTTGTTAACACATGGATTGATTCTATGAGAGCTTCTTCACCCACTAGAGTCAAATCATCATCTCCCACTCTCAAAACTGTTTATATATATATGCAGCTTTACCATCCTTCAGCACTGAACATGTTTGATCAGATTATGTATAATTCCAAAGGGAAACAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTACAGATCCAGATAAAGCTTACATGAGCAAAAAGATGAGAGCCACATTAAAGGACATAGCAAGGCATTTTCCCACAGCCATAGTGAGTGGAAGGTGCATAGACAAGCTTTATAGCTTTGTGAGATTGGCAGAACTGTACTATGCTGGAAGCCATGGCATGGACATAAAGGGACCAACTAATAGCAAAAGAAATAATAATAATAATGATAATGAAGGGGTTCTTTTCCAGCCTGCAAGTGAATTCCTACCCATGATCAATGAGGTGTACAAGATCTTGGTGGAAAAAACAAAGTGTGTCCCGGGGGCTAAGGTAGAAAATAACAAGCTTTGCTTGTCCGTGCACTTTCGCTGCGTTGACGAAAAGAGTTGGGCAGCATTGGCAGAGCAAGTTACCTTAGTGGTCAATAAGTACCCAAAACTGAAGCTAACTCAAGGAAGAAAAGTGTTAGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAGTTCTTGTTAAAGTCACTAGGATATGCAAATTCTAACAACGTATTTCCAATCTATATTGGTGATGATCGAACTGACGAAGATGCTTTTAAGGTTTTACGCAATAGTGGTCAAGGAATTGGAATTCTTGTTTCTAAAATTCCAAAAGAAACAGACGCTTCCTACACTTTGCAAGATCCATCAGAGGTTGGGCAATTTTTGCGGCATTTGGTGGAGTGGAAAAAAACAAGTTCTCACTCCCGCAAGTTGTAG 1146 0.4023 MTNQNVVGAPIGKSHVNTTLVELAMSISNSNIVLPRTSLPELMALLGGLTFLGQPQKKLLKDGSGGKVVNTWIDSMRASSPTRVKSSSPTLKTVYIYMQLYHPSALNMFDQIMYNSKGKQIVTFLDYDGTLSPIVTDPDKAYMSKKMRATLKDIARHFPTAIVSGRCIDKLYSFVRLAELYYAGSHGMDIKGPTNSKRNNNNNDNEGVLFQPASEFLPMINEVYKILVEKTKCVPGAKVENNKLCLSVHFRCVDEKSWAALAEQVTLVVNKYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLKSLGYANSNNVFPIYIGDDRTDEDAFKVLRNSGQGIGILVSKIPKETDASYTLQDPSEVGQFLRHLVEWKKTSSHSRKL. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02020 381 FunFam Trehalose 6-phosphate phosphatase 219 378 - -
Seca8g02020 381 NCBIfam HAD-IIB family hydrolase 124 332 IPR006379 -
Seca8g02020 381 CDD HAD_TPP 124 362 - -
Seca8g02020 381 SUPERFAMILY HAD-like 124 372 IPR036412 -
Seca8g02020 381 Gene3D - 221 380 IPR023214 -
Seca8g02020 381 Gene3D - 121 220 IPR023214 -
Seca8g02020 381 FunFam Trehalose 6-phosphate phosphatase 213 289 - -
Seca8g02020 381 NCBIfam trehalose-phosphatase 119 369 IPR003337 GO:0003824|GO:0005992
Seca8g02020 381 Pfam Trehalose-phosphatase 124 359 IPR003337 GO:0003824|GO:0005992
Seca8g02020 381 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 55 378 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02020 Seca-Chr8 43028441 43031333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02020 117 368 Trehalose Biosynthesis Gene Families AT1G70290 26.022 2.69e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02020 K01087 - gmx:100792915 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02020 8 43028441 43031333 Seca4g02784 4 47990810 47993281 PCT