Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01994 ATGGCTGATTCACTATCAGTTAATGTTGATTCCACACCTAAGCTTGAATTGTATACTAAACAGGCACATAGAACTCACCATGAGACTGAACATTCAGACTCTCCATCTAGCATCCAAAAGGCTATTGCTGAGTTCGTGGGTACATACATTCTTATATTTGCTGGTTGTGGAGCTGCTCTTATCAATGAGAAGCTGCCACTTACAATAATAGGCATAGCAATAGTTTCAGGCTTAGCTTTGACGGTTGCTACATATTCAGTTGGTCATGTTTCTGGTGGCCATTTCAATCCTGCAGTCACAATTGCCTTGGCTGCTGTCCGAAAAATTCAATTGAAACTTGTGCCTACTTATGTGTTGTGCCAGTTGATTGGTTCTACACTGGCCACTCTCACCCTCAAAGTGTTGTATCATGACAAGGTGGATATTGGAGTTACAGTGACTCAATACTTGAGCCCAACTTCTGATCTTGAAGCATTGGTGTGGGAATTCATACTCACTTTCATACTGATGCTCACTATTTGTGGTGCTGCCACTGATCACAGAGGGAGCAAAGAACTCACTGGCGTTGCAATCGGCATTGCTGTACTGATTAGCATCATCATTGCCGGGCCAATTACTGGAGCTTCCATGAATCCTGCAAGGAGTTTAGGCCCTGCCATTGTATCTGGTGATTACAAAAACATCTGGGTTTTCATCATAGGTCCTACTCTGGGAGCAGTCTCTGCAACTATGCTTTACACATTTCTAAGAGTAGCCAAACCAACTATACCTGAACCATGTCACATGTGCAGTCATAATCATTTACCTTTCTGA 813 0.428 MADSLSVNVDSTPKLELYTKQAHRTHHETEHSDSPSSIQKAIAEFVGTYILIFAGCGAALINEKLPLTIIGIAIVSGLALTVATYSVGHVSGGHFNPAVTIALAAVRKIQLKLVPTYVLCQLIGSTLATLTLKVLYHDKVDIGVTVTQYLSPTSDLEALVWEFILTFILMLTICGAATDHRGSKELTGVAIGIAVLISIIIAGPITGASMNPARSLGPAIVSGDYKNIWVFIIGPTLGAVSATMLYTFLRVAKPTIPEPCHMCSHNHLPF. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01994 270 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Seca8g01994 270 Gene3D Glycerol uptake facilitator protein. 5 257 IPR023271 -
Seca8g01994 270 PANTHER AQUAPORIN NIP2-1 26 253 IPR034294 -
Seca8g01994 270 CDD MIP 39 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01994 270 NCBIfam MIP family channel protein 43 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01994 270 Pfam Major intrinsic protein 34 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01994 270 SUPERFAMILY Aquaporin-like 35 258 IPR023271 -
Seca8g01994 270 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01994 270 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01994 270 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01994 270 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01994 270 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g01994 270 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01994 Seca-Chr8 42181608 42184427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01994 10 258 Major Intrinsic Protein MIP AT5G37820 43.359 6.64e-66 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01994 K09874 - gmx:100798380 419.468