Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01992 ATGAATAAATTATGCTGTTTTAAGTCTTCTTTCTCTCAGCTTGTAGCTGCACGTTCCTCATCCAGCACCGGTAAGGGGAAGAATCATGAAGGGTCAGTGAAGTATGGTTTCACTCTAGTGAAAGGGAGAGCTAATCATCCAATGGAGGATTACCATGTTGCCAAGTTTATGAAGATAAAGGAAAAGGAATTGGGATTGTTTGCTATTTATGATGGCCACCTGGGAGATCGTGTGCCTGCCTACTTACAGAAACATTTGTTTTCCAACATTTTAAAGGAGGAAGAATTTTGGGATGACCCTGCTGCATCTATAGCAAAAGCATATCTGAGTACAGATCAGGCAATTCTTTCACATAGTTCTGATTTGGGACGTGGTGGATCAACAGCTGTAACTGCAATATTAATCAATGGTCAAAAGTTATTGATAGCTAATGTAGGAGATTCACGAGCAGTTCTTTCAAGAAAAGGTCAAGCAGTGCAAGTGACTACAGATCATGAGCCTAACACAGAACGAGGCAGCATTGAGAATAAAGGTGGTTTTGTCTCCAACATGCCAGGTGATGTGCCAAGAGTAAATGGGCAACTAGCTGTTTCTCGTGCATTTGGAGACAAGAGCCTCAAGTCACATTTGCGATCAGACCCTGATGTACAGAGTATTGGTGTAGATGTTGATATTGATATTCTAATCCTCGCAAGTGATGGACTTTGGAAGGTAATGCCTAATCAAGAGGCAGTGGATATTGCTAGAAGGATGAAAGATCCACTGAAAGCAGCTAAGCAGTTAACAGCTGAAGCCTTAAAAAGAGACAGTAAAGATGATATATCTTGTGTTGTGGTTAAATTTAGGTGTTGA 852 0.4085 MNKLCCFKSSFSQLVAARSSSSTGKGKNHEGSVKYGFTLVKGRANHPMEDYHVAKFMKIKEKELGLFAIYDGHLGDRVPAYLQKHLFSNILKEEEFWDDPAASIAKAYLSTDQAILSHSSDLGRGGSTAVTAILINGQKLLIANVGDSRAVLSRKGQAVQVTTDHEPNTERGSIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDVQSIGVDVDIDILILASDGLWKVMPNQEAVDIARRMKDPLKAAKQLTAEALKRDSKDDISCVVVKFRC. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01992 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Seca8g01992 283 SMART PP2C_4 30 279 IPR001932 -
Seca8g01992 283 SUPERFAMILY PP2C-like 32 282 IPR036457 -
Seca8g01992 283 SMART PP2C_SIG_2 45 281 IPR001932 -
Seca8g01992 283 FunFam Probable protein phosphatase 2C 39 25 282 - -
Seca8g01992 283 CDD PP2Cc 33 281 IPR001932 -
Seca8g01992 283 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Seca8g01992 283 MobiDBLite consensus disorder prediction 163 182 - -
Seca8g01992 283 Gene3D - 29 283 IPR036457 -
Seca8g01992 283 PANTHER PROTEIN PHOSPHATASE 27 281 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01992 Seca-Chr8 42087990 42091813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01992 1 282 PP2C-type Phosphatase Gene Family AT1G22280 72.222 6.55e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01992 K17506 - gmx:100797292 493.426