Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01983 ATGGCTTACCCACATTACCGATCACAGTTTGGAGACACAACTTTCACAAAAGTGTTTGTTGGAGGATTAGCTTGGGAGACTCCAACGGAAGAAATGCGCAAATATTTTGAGCAATTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGCAAAATCTAAAGGCTATGGATTTGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCTTGTGCTGATCCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCACTAGGAAGACCTAGACCATCACCACCAAGAGGGAGGAGTAGTAGTACTACATTTCAAGGAGGGGTGGTGGGGACAGGAGGAGGAACACCAGGTGCAGCGGCGGCGTACGGTGGTGTTCCGGCAGCAGGACCACCACCACTGCCACCACCACCACCAATACTGTACCCTCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCACCAAGCCACATTGTATAATCCTCAGATTCAGCAACCACAATACTATCATCAACAACTCTATGGACCATCATCTTCCACTATGGCAACCCCATATTACTATGGCTATTCTGTGCAAGCACCAAGGGGTACATTTTCTACACCCCAACCACATCGCATACCAGCTGGAACGTCCTATCTATACTACCCTACACCAATTGAAGGTTCCTTCTCTGCATATCGTCCACCTCAACAATTAGCAATAAGGCAAACCCCTCCTTCCCCTAGTGATTCACAGACTCAGCAGCGTACCTCCTCCGAGACAGCAACTGGAGTAGTTATAACTTCAGAAAGTTCAAATACCCAAGGGAAGAACTAA 840 0.4643 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRSSSTTFQGGVVGTGGGTPGAAAAYGGVPAAGPPPLPPPPPILYPPYGYPTYTPDYGYHQATLYNPQIQQPQYYHQQLYGPSSSTMATPYYYGYSVQAPRGTFSTPQPHRIPAGTSYLYYPTPIEGSFSAYRPPQQLAIRQTPPSPSDSQTQQRTSSETATGVVITSESSNTQGKN. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01983 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Seca8g01983 279 FunFam RNA-binding protein 24-B isoform X1 3 110 - -
Seca8g01983 279 PANTHER BOULE-RELATED 6 260 - -
Seca8g01983 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Seca8g01983 279 MobiDBLite consensus disorder prediction 101 115 - -
Seca8g01983 279 SUPERFAMILY RNA-binding domain, RBD 15 114 IPR035979 GO:0003676
Seca8g01983 279 SMART rrm1_1 17 89 IPR000504 GO:0003723
Seca8g01983 279 MobiDBLite consensus disorder prediction 240 279 - -
Seca8g01983 279 Gene3D - 3 110 IPR012677 -
Seca8g01983 279 CDD RRM_RBM24_RBM38_like 16 91 - -
Seca8g01983 279 MobiDBLite consensus disorder prediction 91 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01983 Seca-Chr8 41878521 41884454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01983 12 92 C2H2 Transcription Factor Family AT2G19380 38.272 3.88e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01983 K25006 - gmx:100788516 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01983 8 41878521 41884454 Seca8g01983 8 41878521 41884454 ECH
Seca8g01983 8 41878521 41884454 Seca4g02823 4 48817652 48822455 PCT