Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01976 ATGAATCAAAACAATCTTCAGCCTCTACCTCTGCTAAGCAGTTTCCTTGGTTCAGCTTCACAGGAATCTTTACTACTAAACCAAAATCCTAAAACATGCTATAGCCAAGCAGAGGATGTCACGGTGGCCTTACACATAGGCCTCCCTGACAATTCCAATGGCTCCCACAATAATAACAATGGATTTGTGAATGCCCCAACTCATGTTCCTAACAATTACTGGATACCAACTCAAGAACAAATCCTCATTGGATTCAGTCATTTCTCTTGCCCTGTTTGCTTCAAAACCTTCAACCGCTACAACAACCTTCAGGTGATGCATATGTGGGGACATGGATCACAGTATCGTAGAGGACCAGACTCACTGAAACGAACTCATCCACGGCCCTTATTAGACATTCCATGCTATTGTTGTTCAAAGGGATGCAAGAACAACATTGAACACCCAAGAGCTAAGCCTCTGAAGGATTTTCGAACTTTGCAGACACATTACAAGAGAAAGCACGGGGCAAAGCCCTTTACATGTCGCAAGTGTGGGAAGTCCTTGGCAGTGAAGGGTGATTGGAGAACCCATGAGAAAAACTGTGGCAAACGCTGGCTTTGTATTTGTGGTTCGGACTTCAAACATAAGAGGTCGCTTAAAGACCATATCAAAGCATTTGGCTTTGGACATAGCCCTTTTTCTTCTTCAGCTGAGGGCATGTAA 705 0.4383 MNQNNLQPLPLLSSFLGSASQESLLLNQNPKTCYSQAEDVTVALHIGLPDNSNGSHNNNNGFVNAPTHVPNNYWIPTQEQILIGFSHFSCPVCFKTFNRYNNLQVMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSKGCKNNIEHPRAKPLKDFRTLQTHYKRKHGAKPFTCRKCGKSLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSAEGM. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01976 234 FunFam Zinc finger protein WIP2 142 224 - -
Seca8g01976 234 PANTHER ZINC FINGER PROTEIN WIP2 9 228 IPR043584 GO:0003700|GO:0010468
Seca8g01976 234 SUPERFAMILY beta-beta-alpha zinc fingers 158 193 IPR036236 -
Seca8g01976 234 Gene3D Classic Zinc Finger 142 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01976 Seca-Chr8 41824935 41826802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01976 1 229 C2H2 Transcription Factor Family AT1G34790 59.289 1.92e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g01976 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01976 - - gmx:547675 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01976 8 41824935 41826802 Seca8g01976 8 41824935 41826802 ECH