Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01948 ATGGAGCGCTACGAGATTCTCAAAGATATTGGGTCTGGGAATTTTGCTGTGGCCAAGCTTGTTAGGGACATCTACACCAAAGAATTTTTTGCTGTCAAGTTTATTGAGAGAGGCCAGAAGATTGATGAGCATGTCCAGAGGGAAATCATGAACCATAGATCATTGAAGCATCCCAATATTGTTAGATTCAAAGAGGTTAGTAAACTCATGGTCCTATTAAGACTCTACTTGCAGGTCCTGCTGACACCAACACATCTAGCCATAGTAATGGAATATGCAGCCGGAGGAGAACTCTTTGAGAGAATATGCAGTGCTGGTAGATTTAGTGAAGATGAGGCAAGATTTTTCTTTCAGCAATTGATATCAGGGGTCAGTTACTGTCATTCAATGCAAATCTGTCATAGAGATCTGAAGCTTGAAAACACACTCTTAGATGGAAGCACTGCGCCACGGGTCAAAATTTGTGACTTTGGATACTCAAAGTCATCTGTATTGCATTCACAACCCAAATCTACAGTAGGAACTCCAGCTTACATTGCACCTGAGGTTCTGACGAGAAAAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGAGTCACTTTATACGTGATGTTAGTTGGGGCATATCCTTTTGAAGACCCAGAGGATCCGAGAAACTTTAGAAAAACCATTGGTAGGATACTAAGTGTTCAATACTCAGTCCCTGATTATGTACGAATCTCCGTGGAATGTACACATCTTCTATCACAAATATTTGTGGCAAGTCCTGAAAAGAGAATAACAATACCACAAATTAAAAACCATCCATGGTTTTTGAGGAACTTACCCATAGAATTAATGGAAGGTGGAAGCTGGCAAAGTAATGATGTAAATAATCCATCCCAAAGTATTGAGGAAGTCCTGTCCATTATACAAGAGGCAAGCAAACCTCTTAACATCCCCAAGGCTGGTGGTGGCCTTCTCATTGGAGGCAGCATGGACCTGGATGACTTGGATTGTGATGCAGATTTTGATGATATAGAAACAAGTGGTGATTTTGTGTGTCCTCCTCTTTAA 1062 0.4077 MERYEILKDIGSGNFAVAKLVRDIYTKEFFAVKFIERGQKIDEHVQREIMNHRSLKHPNIVRFKEVSKLMVLLRLYLQVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLTRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRILSVQYSVPDYVRISVECTHLLSQIFVASPEKRITIPQIKNHPWFLRNLPIELMEGGSWQSNDVNNPSQSIEEVLSIIQEASKPLNIPKAGGGLLIGGSMDLDDLDCDADFDDIETSGDFVCPPL. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01948 353 SUPERFAMILY Protein kinase-like (PK-like) 1 282 IPR011009 -
Seca8g01948 353 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca8g01948 353 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Seca8g01948 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca8g01948 353 Gene3D Transferase(Phosphotransferase) domain 1 93 280 - -
Seca8g01948 353 FunFam Serine/threonine-protein kinase SRK2E 93 281 - -
Seca8g01948 353 SMART serkin_6 4 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01948 353 PANTHER SERINE/THREONINE KINASE 2 288 - -
Seca8g01948 353 ProSiteProfiles Protein kinase domain profile. 4 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01948 353 Pfam Protein kinase domain 4 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01948 353 CDD STKc_SnRK2 3 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01948 Seca-Chr8 40789775 40794021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01948 3 292 CBL-interacting serine-threonine protein kinases AT4G24400 39.465 2.52e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca8g01948 Pkinase 7.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01948 K14498 - gmx:100798091 613.224