Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01928 ATGGCGTGGAACCACAGAAAGCTCTTCCCTGGAGAAACTAACACAAACCAAACCCAAGATTGTTATGGCTTTTGTGACCCATCATGTCCTTACAATTGCTACTCTAACCCTGACTACTACTACACTCCACCTCCACCATCTATTTTGGCTTCTGAAAACTCAAACCAAGTTAACCATATCTCCACCTACTTGATCATCCTTGTTTCTTTGTTCACAATAATCTTTATAGTTGTTGGTTTCTACGTGATCAAAGTGAAGTGTTATGATACATGGTGTGGCTGGAGAGTTAACAACTCTGTTCCCTCTCAAACAGACAACTCTGAAGAGTTTCTCAATGAGAACCAAGTTGATCACCCTGTGTGGCTTATAGCGACAGTTGGTTTGCAACAATCAATGATAAATTCAATTACAGTGTGTAAGTACAGAAAAGATGAAGGGTTGATTGAAGGAACTGAATGTTCAGTGTGTTTGAATGAGTTTCGTGAAGATGAAACATTAAGACTCTTGCCAAAGTGTAACCATGCTTTTCACATCCCCTGTATTGACACTTGGTTGAGATCTCATACCAATTGTCCTCTTTGCCGTGCTGGTATTGTCACTAATAATGTTCCTCCTCCTGAAGTAGTGGTGTCAAATTTGGCTACTTTGGAGAGGGAAAATACAAACTTTGGAAGAAATCAAGAGACCCAGATGGAGAATTCAAGGAATGATGGTGGATTAAGCAACAACAGGGTTATTGATGGGGATTTGGAAAACAGGGCTGGAACAGGGGAATCAAGTGAAACACTTGAGTTCACTGATGAGTCAAATTCCAAGGAGCGGGTAATCAATGACCCAATTCAGAATCAAAGGGTTCTAAATGATGAGATACAAACAGAAATGGGGTCTGTTTCAACTGATCCTAGATTGGCTGGTGGTGGTGGTGATTGTCTTGATCCAGGTGAGGTCAATTCATGTTCTATAGAACCTGAAAGTCATCATCATGTTGTTGATCATACACAGGATGAGACAGATACACAAGATGGTGATTACTCAAAAACGTGTAAAACAATGCGTCGTTCTTCAATTGAACAGTGTTTGCACATAAGCCCGGTAACTATGAAAAGGTCATTCTCCTGGAATGGAAGGATTTTATCTACAAGAGGTTACATGAGTCTAAACTCAACTCTTCCCTATTAG 1179 0.4029 MAWNHRKLFPGETNTNQTQDCYGFCDPSCPYNCYSNPDYYYTPPPPSILASENSNQVNHISTYLIILVSLFTIIFIVVGFYVIKVKCYDTWCGWRVNNSVPSQTDNSEEFLNENQVDHPVWLIATVGLQQSMINSITVCKYRKDEGLIEGTECSVCLNEFREDETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVTNNVPPPEVVVSNLATLERENTNFGRNQETQMENSRNDGGLSNNRVIDGDLENRAGTGESSETLEFTDESNSKERVINDPIQNQRVLNDEIQTEMGSVSTDPRLAGGGGDCLDPGEVNSCSIEPESHHHVVDHTQDETDTQDGDYSKTCKTMRRSSIEQCLHISPVTMKRSFSWNGRILSTRGYMSLNSTLPY. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01928 392 MobiDBLite consensus disorder prediction 223 241 - -
Seca8g01928 392 MobiDBLite consensus disorder prediction 275 298 - -
Seca8g01928 392 MobiDBLite consensus disorder prediction 321 346 - -
Seca8g01928 392 MobiDBLite consensus disorder prediction 223 346 - -
Seca8g01928 392 FunFam RING-H2 finger protein ATL54 128 201 - -
Seca8g01928 392 SUPERFAMILY RING/U-box 142 201 - -
Seca8g01928 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 202 IPR013083 -
Seca8g01928 392 PANTHER RING-H2 FINGER PROTEIN ATL16 47 334 IPR044600 GO:0016567|GO:0016740
Seca8g01928 392 SMART ring_2 153 194 IPR001841 -
Seca8g01928 392 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Seca8g01928 392 Pfam Ring finger domain 152 195 IPR001841 -
Seca8g01928 392 CDD RING-H2_EL5-like 152 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01928 Seca-Chr8 40170146 40171324 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01928 5 206 C3H Transcription Factor Family AT1G72220 49.145 4.96e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01928 - - aprc:113847030 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01928 8 40170146 40171324 Seca8g01928 8 40170146 40171324 ECH