Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g01928 | ATGGCGTGGAACCACAGAAAGCTCTTCCCTGGAGAAACTAACACAAACCAAACCCAAGATTGTTATGGCTTTTGTGACCCATCATGTCCTTACAATTGCTACTCTAACCCTGACTACTACTACACTCCACCTCCACCATCTATTTTGGCTTCTGAAAACTCAAACCAAGTTAACCATATCTCCACCTACTTGATCATCCTTGTTTCTTTGTTCACAATAATCTTTATAGTTGTTGGTTTCTACGTGATCAAAGTGAAGTGTTATGATACATGGTGTGGCTGGAGAGTTAACAACTCTGTTCCCTCTCAAACAGACAACTCTGAAGAGTTTCTCAATGAGAACCAAGTTGATCACCCTGTGTGGCTTATAGCGACAGTTGGTTTGCAACAATCAATGATAAATTCAATTACAGTGTGTAAGTACAGAAAAGATGAAGGGTTGATTGAAGGAACTGAATGTTCAGTGTGTTTGAATGAGTTTCGTGAAGATGAAACATTAAGACTCTTGCCAAAGTGTAACCATGCTTTTCACATCCCCTGTATTGACACTTGGTTGAGATCTCATACCAATTGTCCTCTTTGCCGTGCTGGTATTGTCACTAATAATGTTCCTCCTCCTGAAGTAGTGGTGTCAAATTTGGCTACTTTGGAGAGGGAAAATACAAACTTTGGAAGAAATCAAGAGACCCAGATGGAGAATTCAAGGAATGATGGTGGATTAAGCAACAACAGGGTTATTGATGGGGATTTGGAAAACAGGGCTGGAACAGGGGAATCAAGTGAAACACTTGAGTTCACTGATGAGTCAAATTCCAAGGAGCGGGTAATCAATGACCCAATTCAGAATCAAAGGGTTCTAAATGATGAGATACAAACAGAAATGGGGTCTGTTTCAACTGATCCTAGATTGGCTGGTGGTGGTGGTGATTGTCTTGATCCAGGTGAGGTCAATTCATGTTCTATAGAACCTGAAAGTCATCATCATGTTGTTGATCATACACAGGATGAGACAGATACACAAGATGGTGATTACTCAAAAACGTGTAAAACAATGCGTCGTTCTTCAATTGAACAGTGTTTGCACATAAGCCCGGTAACTATGAAAAGGTCATTCTCCTGGAATGGAAGGATTTTATCTACAAGAGGTTACATGAGTCTAAACTCAACTCTTCCCTATTAG | 1179 | 0.4029 | MAWNHRKLFPGETNTNQTQDCYGFCDPSCPYNCYSNPDYYYTPPPPSILASENSNQVNHISTYLIILVSLFTIIFIVVGFYVIKVKCYDTWCGWRVNNSVPSQTDNSEEFLNENQVDHPVWLIATVGLQQSMINSITVCKYRKDEGLIEGTECSVCLNEFREDETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVTNNVPPPEVVVSNLATLERENTNFGRNQETQMENSRNDGGLSNNRVIDGDLENRAGTGESSETLEFTDESNSKERVINDPIQNQRVLNDEIQTEMGSVSTDPRLAGGGGDCLDPGEVNSCSIEPESHHHVVDHTQDETDTQDGDYSKTCKTMRRSSIEQCLHISPVTMKRSFSWNGRILSTRGYMSLNSTLPY. | 393 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g01928 | 392 | MobiDBLite | consensus disorder prediction | 223 | 241 | - | - | |
Seca8g01928 | 392 | MobiDBLite | consensus disorder prediction | 275 | 298 | - | - | |
Seca8g01928 | 392 | MobiDBLite | consensus disorder prediction | 321 | 346 | - | - | |
Seca8g01928 | 392 | MobiDBLite | consensus disorder prediction | 223 | 346 | - | - | |
Seca8g01928 | 392 | FunFam | RING-H2 finger protein ATL54 | 128 | 201 | - | - | |
Seca8g01928 | 392 | SUPERFAMILY | RING/U-box | 142 | 201 | - | - | |
Seca8g01928 | 392 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 202 | IPR013083 | - | |
Seca8g01928 | 392 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 47 | 334 | IPR044600 | GO:0016567|GO:0016740 | |
Seca8g01928 | 392 | SMART | ring_2 | 153 | 194 | IPR001841 | - | |
Seca8g01928 | 392 | ProSiteProfiles | Zinc finger RING-type profile. | 153 | 195 | IPR001841 | - | |
Seca8g01928 | 392 | Pfam | Ring finger domain | 152 | 195 | IPR001841 | - | |
Seca8g01928 | 392 | CDD | RING-H2_EL5-like | 152 | 195 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g01928 | Seca-Chr8 | 40170146 | 40171324 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g01928 | 5 | 206 | C3H Transcription Factor Family | AT1G72220 | 49.145 | 4.96e-65 | 211 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g01928 | - | - | aprc:113847030 | 553.518 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca8g01928 | 8 | 40170146 | 40171324 | Seca8g01928 | 8 | 40170146 | 40171324 | ECH |