Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01925 ATGGCCCTTGAGGCTGTGGTTTTCCCACAAGATCCATTCTCTTATGGATGCAAAGATTACTTATACTCTTTAGTTGGAGCTGCAAGTGAAGCAGCACCATGGAACCACAACTACGGTTCTCAACCACCAGAAGAGAAAGCACTTCTTGGAATCATCAACAATAACATAGAGCAAAATCTCCATGCAAATTGGGATTCCTCTTCTCCTTCTGCTGTGTTACAAAATGTCAAGGACCAATGGGATTCTCAGTCTCACTCTCACTCACACTCTTCCCCTGAAACCTGCACCGTTGATGGAACTTTCCCTCTTCCTCCTTCCTCTGTTGAAGCCAAAACCACTGTCACAGGTAGGCGTAAACGACGTCGTACCAAAAGCGCCAAAAACGAAGAGGAAATCGAGAACCAAAGGATGACCCACATTGCTGTTGAGCGCAATCGAAGGAAACAGATGAATGAGTACCTCGCTGTTCTCAGATCTTTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCGTCTATTATTGGAGGAGCGATTAACTTTGTGAAGGAACTGGAGCAGCTACTACAGTGCATGAAGGGGAAAAAGAAAACAAAGGAACAAGGGAATAATATTGATGAGAATGGTTCATCATCATCATCACCTTTTGCTGAGTTCTTCATGTTCCCTCAATACTCAACTCGTGCGACTCAGAGCAGTAGCAGCAGCACGTGCTACCCTGGCACGAGTGAAGCGATGATGGCACAGAACCAGAATCAGTCACGTGCCGTGGCAGATATAGAAGTGACCCTTGTGGATAGTCATGCCAACATAAAAATACTCTCAAAGAAACGACCAGGGCACCTTATGAAGATGGTTGTTGGGTTAGAGAGTCTTGGATTGAGCATTCTTCATCTCAATGTTACCACTGTGGATGATATGGTCCTTGCTTCAGTTAGTGTAAAGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGAAATTGCAGCTGCTGTGAATCAACTATCACGCACAGTTCAGGAAGAAGCTGTTGCTATTTTCAGCTGA 1047 0.4518 MALEAVVFPQDPFSYGCKDYLYSLVGAASEAAPWNHNYGSQPPEEKALLGIINNNIEQNLHANWDSSSPSAVLQNVKDQWDSQSHSHSHSSPETCTVDGTFPLPPSSVEAKTTVTGRRKRRRTKSAKNEEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGKKKTKEQGNNIDENGSSSSSPFAEFFMFPQYSTRATQSSSSSTCYPGTSEAMMAQNQNQSRAVADIEVTLVDSHANIKILSKKRPGHLMKMVVGLESLGLSILHLNVTTVDDMVLASVSVKVEEGCQLNTVDEIAAAVNQLSRTVQEEAVAIFS. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01925 348 Gene3D - 118 203 IPR036638 GO:0046983
Seca8g01925 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 185 IPR011598 GO:0046983
Seca8g01925 348 MobiDBLite consensus disorder prediction 78 112 - -
Seca8g01925 348 FunFam Basic helix-loop-helix transcription factor 125 200 - -
Seca8g01925 348 Pfam Helix-loop-helix DNA-binding domain 135 186 IPR011598 GO:0046983
Seca8g01925 348 SMART finulus 140 191 IPR011598 GO:0046983
Seca8g01925 348 PANTHER MAX DIMERIZATION, MAD 63 342 - -
Seca8g01925 348 CDD bHLH_AtFAMA_like 137 204 - -
Seca8g01925 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 199 IPR036638 GO:0046983
Seca8g01925 348 MobiDBLite consensus disorder prediction 78 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01925 Seca-Chr8 40049839 40052968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01925 1 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.401 5.01e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g01925 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01925 - - gmx:100803240 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01925 8 40049839 40052968 Seca8g01925 8 40049839 40052968 ECH
Seca8g01925 8 40049839 40052968 Seca4g01683 4 27417278 27419939 PCT